Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29073 | Canola | cytosol, plastid | 69.31 | 78.21 |
| Bra012812.1-P | Field mustard | cytosol | 69.05 | 77.91 |
| CDX90610 | Canola | cytosol | 69.05 | 77.91 |
| Solyc11g044360.1.1 | Tomato | cytosol | 55.29 | 65.93 |
| KRH32500 | Soybean | cytosol | 57.41 | 64.78 |
| PGSC0003DMT400059549 | Potato | cytosol | 56.08 | 64.63 |
| KRH19886 | Soybean | cytosol | 56.61 | 63.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.23 | 61.93 |
| VIT_03s0038g04180.t01 | Wine grape | cytosol, plastid | 57.94 | 61.86 |
| GSMUA_Achr7P20690_001 | Banana | cytosol | 32.8 | 56.11 |
| Os08t0515800-01 | Rice | cytosol | 48.41 | 54.95 |
| EES14251 | Sorghum | cytosol | 47.88 | 54.19 |
| Zm00001d049743_P001 | Maize | cytosol, mitochondrion, nucleus | 47.62 | 53.89 |
| TraesCS7A01G250000.3 | Wheat | cytosol | 46.83 | 53.15 |
| TraesCS7B01G141200.1 | Wheat | cytosol | 46.83 | 53.15 |
| TraesCS7D01G248600.1 | Wheat | cytosol | 42.86 | 52.09 |
| HORVU7Hr1G051550.3 | Barley | mitochondrion | 47.88 | 46.77 |
| AT2G03050.2 | Thale cress | cytosol, golgi, mitochondrion, plastid | 17.72 | 23.59 |
| AT3G18870.1 | Thale cress | plastid | 15.87 | 21.9 |
| AT2G34620.1 | Thale cress | plastid | 14.55 | 18.15 |
| AT2G36000.1 | Thale cress | plastid | 15.87 | 18.02 |
| AT4G14605.2 | Thale cress | cytosol | 23.28 | 17.85 |
| AT1G78930.1 | Thale cress | plastid | 24.87 | 15.91 |
| AT2G44020.1 | Thale cress | mitochondrion | 20.9 | 15.58 |
| AT4G02990.1 | Thale cress | plastid | 20.63 | 14.42 |
| AT5G55580.1 | Thale cress | plastid | 18.78 | 14.31 |
| AT5G54180.1 | Thale cress | plastid | 18.52 | 14.0 |
| AT2G21710.1 | Thale cress | plastid | 21.96 | 12.95 |
Protein Annotations
| Gene3D:1.25.70.10 | MapMan:15.6.2.2 | EntrezGene:829972 | ProteinID:AEE86888.1 | ArrayExpress:AT4G38160 | EnsemblPlantsGene:AT4G38160 |
| RefSeq:AT4G38160 | TAIR:AT4G38160 | RefSeq:AT4G38160-TAIR-G | EnsemblPlants:AT4G38160.3 | TAIR:AT4G38160.3 | Unigene:At.20825 |
| UniProt:F4JSY9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003690 | GO:GO:0003723 |
| GO:GO:0003727 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009058 | GO:GO:0009579 |
| GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019843 | GO:GO:0032502 |
| GO:GO:0042255 | GO:GO:0042651 | InterPro:IPR038538 | InterPro:MTERF | InterPro:MTERF_sf | RefSeq:NP_001190948.1 |
| PFAM:PF02536 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR13068 | PANTHER:PTHR13068:SF5 | SMART:SM00733 | UniParc:UPI0001E92F9E | Symbol:pde191 | : |
Description
pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
Coordinates
chr4:+:17902266..17904169
Molecular Weight (calculated)
43105.1 Da
IEP (calculated)
9.315
GRAVY (calculated)
-0.114
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKTEYAAMQ SSCLSEVWVG KKPLVIPQIW RPLVKGHI
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKTEYAAMQ SSCLSEVWVG KKPLVIPQIW RPLVKGHI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.