Factsheet for TraesCS6A01G343900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G325000.1	Wheat	mitochondrion	89.81	98.78
TraesCS6B01G376100.1	Wheat	mitochondrion	89.81	98.78
HORVU6Hr1G082970.1	Barley	cytosol	91.48	93.74
Os02t0783100-01	Rice	mitochondrion	79.81	88.87
EES07645	Sorghum	mitochondrion	79.63	87.93
Zm00001d052081_P003	Maize	mitochondrion	79.26	87.53
Bra004800.1-P	Field mustard	cytosol	54.07	65.32
VIT_11s0016g02240.t01	Wine grape	mitochondrion	56.67	63.62
KRH60420	Soybean	cytosol	47.59	62.99
GSMUA_Achr10P...	Banana	mitochondrion	43.15	62.8
CDX79786	Canola	mitochondrion	55.56	60.85
KRH41721	Soybean	mitochondrion	55.74	60.32
Solyc11g017050.1.1	Tomato	extracellular	55.56	60.24
PGSC0003DMT400023814	Potato	mitochondrion	54.81	60.16
CDY17890	Canola	mitochondrion	55.19	59.84
AT2G44020.1	Thale cress	mitochondrion	55.37	58.97
TraesCS1A01G252300.1	Wheat	cytosol	36.3	49.49
TraesCS2A01G284000.1	Wheat	cytosol	11.85	47.41
TraesCS7A01G250000.3	Wheat	cytosol	13.33	21.62
TraesCS5A01G423600.1	Wheat	plastid	12.78	21.56
TraesCS6A01G214200.1	Wheat	plastid	17.04	19.01
TraesCS1A01G084300.1	Wheat	mitochondrion	10.93	18.79
TraesCS6A01G201500.1	Wheat	extracellular, mitochondrion, plastid	9.63	18.57
TraesCS2A01G255200.1	Wheat	cytosol	14.63	17.06
TraesCS2A01G189200.1	Wheat	plastid	15.0	16.23
TraesCS5A01G363600.1	Wheat	plastid	15.0	14.16

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.2.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF8	SMART:SM00733	EnsemblPlantsGene:TraesCS6A01G343900	EnsemblPlants:TraesCS6A01G343900.1	SEG:seg

Description

No Description!

Coordinates

chr6A:-:578042098..578043817

Molecular Weight (calculated)

60706.6 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.123

Length

540 amino acids

Sequence
(BLAST)

001: MERQAHNRRR NTPIRVRPRK APQTPQPLSP PLSRRPSRPR RRPRAAAAAM LPLARTALRR LGPAAAGDGS LPGRLLLLAP LASKPSSSTP PEYQMPSVTW
101: GVIQGRRERL VSRVLALDFL RSAGVTDPAG ELEAVELPSS LDVLQERLDF LLRLGLSTDD LSAYPFLLAC SLRKNVIPVL SYLEKLGVTR ARLAAFVRAY
201: PACLHASVAV DLAPIVKALR GLDVDRQDIP RVLERYPDVL GLKPDGTIST SVAYLVGIVG VAPRDIGPMV THYPFFLSMR VGTTIKPFCD YITSLGLPMR
301: ILARIIEKRP YILGYDLEET VKPNVEALLS FGIRKEVLPL MIAQYPSILG LPLKVKLAAQ QYFFNLKLKM DPDGFARAVE KLPQLVSLHQ NVILKPVEFL
401: RGRGITDDDI GRMLIRCPQI LLLRNELMKN SFYFFKSELK RPISELLEYP EYFTYSLESR IKPRYMRVAS KGIRCSLDWF LNCSDQRFEE RMRGDFIEGD
501: APGPSFTMGG KLQMPGNQLV SDDDNEESDD EVLYRRTVML

Best Arabidopsis Sequence Match ( AT2G44020.1 )
(BLAST)

001: MSYLLRRNKF VALLKRQSLI FPITSTEAKT LINPDPNIPQ FQNPCSIFRI AHYATQSSKF PEYEMPTVTW GVIQGKKEKL VNRVKICDYL KGLGIITDEL
101: ESIELPSTIE VMCERVEFLQ KLGLTIDDIN EYPLMLGCSV RKNLIPVLAY LEKIGISRSK LGEFVKNYPQ VLHASVVVEL APVVKFLRGL DVEKQDLGYV
201: LMKYPELLGF KLEGTMSTSV AYLVSIGVSP RDIGPMVTQY PYLLGMRVGT MIKPLVDYLI SIGLPKKIVA RMLEKRSYIV GYNLEETVKP NVDCLISFGV
301: KKELLPLLIA QYPQILGLPV KAKMSTQQYF FSLKLKIDPE GFARVVEKMP QIVSLKQNVI MKPIEFLLGR AFQVEDIAKM VVRCPQILCS RVELMKNSYY
401: FYKTEMGRPM KELVEYPEYF TYSLESRIKP RYQKLQSKGI RSSLNWFLNC SDQRFEERLQ GNFIDPDTEG PTFDMGGKLE MPGGEIVTDE EEDESDDEVL
501: YRRTLTL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80572]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.