Factsheet for VIT_08s0040g03340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028730	Potato	nucleus	38.43	65.56
CDY18439	Canola	nucleus	45.15	61.49
KRH19715	Soybean	nucleus	61.8	60.97
KRH32312	Soybean	nucleus	61.8	60.83
CDX93373	Canola	nucleus	44.93	60.15
Bra017181.1-P	Field mustard	nucleus	52.91	57.86
AT2G37520.1	Thale cress	nucleus	54.16	57.3
AT3G53680.2	Thale cress	nucleus	53.14	55.28
VIT_08s0007g04490.t01	Wine grape	mitochondrion	26.11	48.72
VIT_06s0061g00820.t01	Wine grape	cytosol	8.21	48.0
Solyc10g084650.1.1	Tomato	nucleus	58.95	38.32
VIT_06s0061g00840.t01	Wine grape	nucleus	33.98	36.16
GSMUA_Achr6P33300_001	Banana	plastid	22.8	30.26
VIT_06s0061g00830.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	24.63	28.42
Zm00001d027880_P002	Maize	nucleus	14.94	26.9
VIT_02s0234g00060.t01	Wine grape	cytosol	3.42	23.81
OQU93136	Sorghum	cytosol	17.67	21.99
Zm00001d028660_P013	Maize	endoplasmic reticulum	21.44	21.96
HORVU4Hr1G059010.32	Barley	plastid	23.49	21.24
OQU92810	Sorghum	cytosol	22.35	20.85
TraesCS4A01G099600.1	Wheat	cytosol	23.95	20.71
TraesCS4B01G204700.1	Wheat	cytosol	23.83	20.61
Os03t0278700-01	Rice	cytosol, nucleus	22.35	20.61
TraesCS4D01G205600.2	Wheat	cytosol	23.72	20.37
VIT_06s0004g06800.t01	Wine grape	nucleus	15.96	19.8
VIT_06s0004g06810.t01	Wine grape	nucleus	16.99	12.52
VIT_19s0014g01500.t01	Wine grape	nucleus	18.36	11.37
VIT_05s0020g03420.t01	Wine grape	nucleus	17.56	10.75
VIT_07s0151g00870.t01	Wine grape	nucleus	15.96	8.67
VIT_05s0020g03450.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100246491	wikigene:100246491	MapMan:15.5.30	Gene3D:3.30.40.10	Gene3D:3.40.630.30	InterPro:Acyl_CoA_acyltransferase
ProteinID:CCB56994	ProteinID:CCB56994.1	UniProt:F6HQU6	EMBL:FN596008	InterPro:GNAT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008080	GO:GO:0016740	GO:GO:0046872	InterPro:IPR000182
InterPro:IPR013083	InterPro:IPR019787	InterPro:Jas	EntrezGene:LOC100246491	wikigene:LOC100246491	PFAM:PF16135
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51186	PANTHER:PTHR42672	PANTHER:PTHR42672:SF4	SMART:SM00249
SUPFAM:SSF55729	SUPFAM:SSF57903	UniParc:UPI00021082BC	ArrayExpress:VIT_08s0040g03340	EnsemblPlantsGene:VIT_08s0040g03340	EnsemblPlants:VIT_08s0040g03340.t01
RefSeq:XP_002273013	RefSeq:XP_002273013.1	RefSeq:XP_010653442.1	RefSeq:XP_010653443.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:14306355..14324182

Molecular Weight (calculated)

96569.4 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.351

Length

877 amino acids

Sequence
(BLAST)

001: MGEGEGCLPV VKDIKVLKDG KTESENSSRM ELKRDHECIA GNIETEASPR KKPVKEALNE EGCSEVSNPI LSPKYNASSV QTITSQVAEL ASTNQAVLGE
101: ITSTSSGNSV PESLSDEEHS RNGSSDGVST TQVVLEIPKH VSSTGIRKIT FKFSKSKEAY NSKLSSEPLH VLGRVGNSHS YIGYPGDPGR NIASPDTGTN
201: MRVNTCWNLE TRNLHFRAPN MELKMSKKVV PKSYPTNVKK LLSTGILDGA LVKYISTSRE KELQGVIRES GYLCGCSACN FTKVLTAYEF EQHAGGRTRH
301: PNNHIYLENG KPIYSIIQQL KTAPLSDLDE VIKNIAGSSV NMECFKAWKA SFHQNNGVTE ADENYHAQLL NHPQSIVSFP VQAVEDSFTG SRLPLKQKEL
401: MKEMTQERKH AAKKPSSYIY GSGLQHKKSS EGAIKKRDND LHRLLFMPNG LPDGAELAYY VKGQRILGGY KQGNGIVCSH CDSEVSPSQF EAHAGWAARR
501: QPYRHIYTSN GLTLHDIAIS LANGQNCTTG DSDDMCTLCG DGGDLILCDG CPRAFHPACL ELQCLPEGDW RCPCCVENFC PDRKVARPIR IQLTRAVKAP
601: ESEIGGCVVC RAHDFSVSKF DDRTVMLCDQ CEKEFHVGCL RDSGLCDLKE LPKDKWFCCD DCSRVHVALQ NLASRGPEMI PASVSSMINR KNLEKGLIDG
701: AADDIQWCIL SGKSCYKEHL PLLSRTTAIF RECFDPIVAS SGRDLIPVMV YGRNISGQEF GGMYCVVLLA KSTVVSAGLI RVFGQEVAEL PIVATSKEHQ
801: GKGFFRALFS CIEELLSSLG VKTLVLPAAE EAEAIWTNKL GFQKMSEERM LKYTRELQLT IFKGTSMLEK EVPCIVE

Best Arabidopsis Sequence Match ( AT2G37520.1 )
(BLAST)

001: MGEGTICLEM PKEENGQLKR DRLDDDTDEG NKGDHFPSKK QAKEASNDDI TSEISNPVAS PVESTSLFRD VSSQPVKSGL VECSGSDFGS EETVSDDASV
101: VGSSQTEQSS DVLPSRFVLE IPKHLSSTGI TKITFKLSKP KKEFDDLPLI KDHTWDAGVV KMPKKKIVSL SYPSNVKKLL ETGILEGARV KYISTPPVRQ
201: LLGIIHSGGY LCGCTTCNFS KVLSAYEFEQ HAGAKTRHPN NHIFLENRRA VYNIVQELKT APRVVLEEVI RNVAGSALNE EGLRAWKASF QQSNSMSDRN
301: YITDHSTVSY LGPGLDESQS LTPCSVENHY FSEKTYAKDT LDEPKRIAKK LTSHVSGTGC HKKVSEGSNR KRDNDLHRLL FMPNGLPDGT ELAYYVKTQK
401: LLQGYKQGSG IVCSCCSREI SPSQFEAHAG MAARRQPYRH IFISSGLSLH DIAMSLANGH VITTGDSDDM CSICGDGGDL LLCAGCPQAF HTACLKFQSM
501: PEGTWYCSSC NDGPISSKKA TTTDPSGNAR PIVIRLSRVV KAPESDIGGC VFCRSHDFSI GKFDDRTVIL CDQCEKEYHV GCLRENGFCD LKEIPQEKWF
601: CCSNCSRIHT AVQNSVSCGP QTLPTPLLDM ICRKDREKGI FTDIGDTVEW RILSGKSRYP EHLPLLSRAA VIFRECFDPI VAKSGRDLIP VMVYGRNISG
701: QEFGGMYCLV LIVNSLVVSA ALLRIFGQEV AELPIVATSR EYQGRGYFQG LYACVENLLS SLNVENLVLP AAEEAESIWT KKFGFTKMSD QQLQEYQKEV
801: QLTIFKGTSM LEKKVPKATT GLSESTTLI

Arabidopsis Description

Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IQY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.