Factsheet for VIT_06s0004g06800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06810.t01	Wine grape	nucleus	72.98	43.36
VIT_02s0234g00060.t01	Wine grape	cytosol	7.5	42.06
Zm00001d008232_P001	Maize	cytosol	17.68	39.06
PGSC0003DMT400043562	Potato	nucleus	46.25	35.58
KXG31496	Sorghum	cytosol, extracellular	5.09	34.29
HORVU4Hr1G056300.1	Barley	extracellular	8.77	34.25
Solyc03g071550.1.1	Tomato	nucleus	46.53	34.16
VIT_06s0061g00820.t01	Wine grape	cytosol	6.79	32.0
TraesCS2A01G085100.1	Wheat	nucleus	27.02	29.66
TraesCS2D01G083000.1	Wheat	nucleus	26.87	29.41
KRH30259	Soybean	nucleus	39.32	29.36
TraesCS2B01G099800.1	Wheat	nucleus	26.73	28.86
Zm00001d022583_P001	Maize	nucleus	27.3	27.57
Solyc09g031580.2.1	Tomato	nucleus	46.68	27.21
PGSC0003DMT400056776	Potato	nucleus	46.53	27.03
KRH30263	Soybean	nucleus	43.14	26.29
KRH17051	Soybean	nucleus	39.04	26.16
GSMUA_AchrUn_...	Banana	nucleus	34.94	25.68
KRH72700	Soybean	nucleus	39.75	25.57
VIT_08s0007g04490.t01	Wine grape	mitochondrion	16.55	24.89
GSMUA_Achr6P32880_001	Banana	nucleus	32.53	21.7
Zm00001d028749_P002	Maize	mitochondrion	33.66	18.7
TraesCS4B01G194600.1	Wheat	nucleus	34.23	17.83
TraesCS4A01G109600.1	Wheat	nucleus	34.23	17.82
TraesCS4D01G195300.1	Wheat	nucleus	34.09	17.76
VIT_06s0061g00840.t01	Wine grape	nucleus	20.37	17.48
VIT_08s0040g03340.t01	Wine grape	nucleus	19.8	15.96
VIT_19s0014g01500.t01	Wine grape	nucleus	26.17	13.06
VIT_05s0020g03420.t01	Wine grape	nucleus	25.88	12.78
VIT_06s0061g00830.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.73	11.84
VIT_07s0151g00870.t01	Wine grape	nucleus	25.46	11.15
VIT_05s0020g03450.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.30	Gene3D:3.30.40.10	Gene3D:3.40.630.30	InterPro:Acyl_CoA_acyltransferase	ProteinID:CCB43467	ProteinID:CCB43467.1
UniProt:F6GUQ4	EMBL:FN594951	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008080	GO:GO:0016740	GO:GO:0046872	InterPro:IPR000182	InterPro:IPR013083	InterPro:IPR019787
InterPro:Jas	PFAM:PF00628	PFAM:PF16135	PFscan:PS50016	PFscan:PS51186	PANTHER:PTHR42672
PANTHER:PTHR42672:SF9	SMART:SM00249	SUPFAM:SSF55729	SUPFAM:SSF57903	UniParc:UPI0002108656	ArrayExpress:VIT_06s0004g06800
EnsemblPlantsGene:VIT_06s0004g06800	EnsemblPlants:VIT_06s0004g06800.t01	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:7499157..7506744

Molecular Weight (calculated)

80522.1 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.536

Length

707 amino acids

Sequence
(BLAST)

001: MNKDMPRFRY TSPQGKTYQS LRQVCLDLGG PAMRADCQIS QDEQRTLCSS HDDVKKSQVS EQEKTDPCRD DDLVDIDREY CPHAVINYYS LGLDKKDYRR
101: KDSVTSNLIA KAKKHLSFMG WLFWYAYKKG KRELRYCSPK GRCYYSLRTA CKACMDEGGA SEDTSTCSPM KIMNVSEESE VQEFVPPMID MRMQKNLVQQ
201: NVETEKRAVK SSNRSQFKSR RMKRHDGLQC VVSNSLQHYA QINGALVKLN NLDGNYPTPA LQSRKSAHQV PIPDSSNNSQ TILSQLIDNN VVLCRAKVHY
301: SSQKDHHPMP EGKIARDGIK NSCCQEVFSP RGFEAHAGSS FHQSDANIFL EDEGSLLEGQ RQMVHRITGK SFTKESSHGK KSNGDQCNND DICSVCHYGG
401: DLVLCDQCPS CFHQSCLGLK ELPEGDWFCP SCCCRICGEN RFDEYSEEDN FKFSCHQCEL QYHVGCLRKQ RHVKLETYPD GTRFCSTQCE KIFLGLLKLL
501: GKPIPVGVDN LTWTLLKPTI SEWFDMDVPD NKALTEVYSK LNIALNVMHE CFEPIKEPHT GRDLVEDVIF CRGSDLKRLN FRGFYIVLLE RNDELISVAT
601: IRVHGEKVAE VPLVGTRSQY RRLGMCRILI NEIEKKLVEL GVERLTLPAA PSVLDTWVTS FGFSKMTDSE RLTFLDYTFL DFQDTVMCQK LLMKIPSTKS
701: SQSTGFA

Best Arabidopsis Sequence Match ( AT5G58610.4 )
(BLAST)

001: MLGVIEDNLK ITIDQFLHDF DAERYPQLKL LNEASQAVYE TNACLSGMLT IAPQEHQFSC IDKDFKPASQ RCQSLSVLTS VSGIRSEASD INKATEISSK
101: KSTAAHKKDI LHKKPGIWHP FDCLAKSGPQ AVSSFIRSPL LPMAMHVRMH LKYMGWTIEH MVDEAGRQRF RYLSPNGRLK EHSLRQVCFR LKQPDKSLTT
201: PGMANPPSLS SENQTYSTQE MRSIVLALPA FNRSVALGEG LKLSTDTLLE YETQGNEEVF TRESRNFCPK KAFPGQKETL RVRIEPKTKA QGIILRLKSK
301: RKQTPKKDEV IVGLQNVNRS MRRGHTSKKL MDIKNRVTSR GKTRVLRSRK RAQRVITPIS RKHSPRNILS WLMDNNVVLP RENIRCCNQK DTTVRKEGKL
401: TREGIKCSCC RRVFTINGFE VHANGASCSG AANIFLDDGR SLLECQVEAY KKRKKAQPPD MLKMKLRQGE NDVFCSVCHY GGKLILCDGC PSAFHANCLG
501: LEDVPDGDWF CQSCCCGACG QFFLKTTSTN AKEEKFISCK QCELKYHPSC LRYDGACDSL DKILGEKWFC SKDCEEIFVI LYDLIGKPRE VSVEKLTWRL
601: VQSLEPNMYG DDASKIEAAA ENHCILSVAL DVMHELFEPV KRPHGGRDLA EDVIFSRWSK FKRLNFSGFY TVLLERNNEL VSVATVRILG KKVAEMPFIG
701: TRFQHRQRGM CRVLINELEK VLIDLGVERL VLPAVPCVLN TWINSFGFTK MTISERKNFL KFTLLEFGRT ILCEKILIKS GVADPIPSIA SLGEQQCDIL
801: RIEDNSASDD GSEVHQAEQH LEESRSTKNP PEEIKTQEER LLIKKENRIV KFYSRRRSKC MRLT

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LUZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.