Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056776 | Potato | nucleus | 91.92 | 91.62 |
| Solyc03g071550.1.1 | Tomato | nucleus | 64.06 | 80.69 |
| VIT_06s0004g06800.t01 | Wine grape | nucleus | 27.21 | 46.68 |
| KRH30259 | Soybean | nucleus | 32.98 | 42.24 |
| VIT_06s0004g06810.t01 | Wine grape | nucleus | 40.89 | 41.68 |
| Zm00001d008232_P001 | Maize | cytosol | 10.72 | 40.62 |
| KRH30263 | Soybean | nucleus | 38.09 | 39.83 |
| Solyc06g082050.1.1 | Tomato | nucleus | 10.47 | 37.35 |
| KRH72700 | Soybean | nucleus | 33.8 | 37.31 |
| HORVU4Hr1G056300.1 | Barley | extracellular | 5.52 | 37.02 |
| KRH17051 | Soybean | nucleus | 32.15 | 36.97 |
| TraesCS2A01G085100.1 | Wheat | nucleus | 17.81 | 33.54 |
| TraesCS2D01G083000.1 | Wheat | nucleus | 17.64 | 33.13 |
| TraesCS2B01G099800.1 | Wheat | nucleus | 17.81 | 32.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.97 | 32.74 |
| GSMUA_Achr6P32880_001 | Banana | nucleus | 27.95 | 31.98 |
| Zm00001d022583_P001 | Maize | nucleus | 17.89 | 31.0 |
| Zm00001d028749_P002 | Maize | mitochondrion | 29.35 | 27.97 |
| TraesCS4B01G194600.1 | Wheat | nucleus | 29.51 | 26.38 |
| TraesCS4A01G109600.1 | Wheat | nucleus | 29.27 | 26.14 |
| TraesCS4D01G195300.1 | Wheat | nucleus | 29.18 | 26.09 |
| Solyc08g078120.1.1 | Tomato | nucleus | 6.27 | 18.63 |
| Solyc03g005170.2.1 | Tomato | nucleus | 15.91 | 17.48 |
| Solyc07g062600.2.1 | Tomato | nucleus | 16.41 | 17.44 |
| Solyc10g083800.1.1 | Tomato | nucleus | 11.71 | 15.67 |
| Solyc09g008520.2.1 | Tomato | nucleus | 11.38 | 14.84 |
| Solyc11g066480.1.1 | Tomato | nucleus | 12.86 | 14.66 |
| Solyc09g076010.2.1 | Tomato | nucleus | 16.41 | 14.59 |
| Solyc09g065340.2.1 | Tomato | nucleus | 15.5 | 13.82 |
| Solyc10g084650.1.1 | Tomato | nucleus | 11.38 | 10.23 |
Protein Annotations
| MapMan:15.5.30 | Gene3D:3.30.40.10 | Gene3D:3.40.630.30 | InterPro:Acyl_CoA_acyltransferase | InterPro:Agenet-like_dom | InterPro:Agenet_dom_plant |
| InterPro:GNAT_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008080 | GO:GO:0016740 |
| GO:GO:0046872 | InterPro:IPR000182 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:Jas | UniProt:K4CSL5 |
| PFAM:PF00583 | PFAM:PF00628 | PFAM:PF05641 | PFAM:PF16135 | PFscan:PS50016 | PFscan:PS51186 |
| PANTHER:PTHR42672 | PANTHER:PTHR42672:SF9 | SMART:SM00249 | SMART:SM00743 | SUPFAM:SSF55729 | SUPFAM:SSF57903 |
| EnsemblPlantsGene:Solyc09g031580.2 | EnsemblPlants:Solyc09g031580.2.1 | UniParc:UPI000276C703 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:29715139..29724070
Molecular Weight (calculated)
138320.0 Da
IEP (calculated)
7.058
GRAVY (calculated)
-0.463
Length
1213 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASKLQLHQN VEVKSSETGF LGSWHLATIV GFNDFVPQVQ YHHLLSDDKE EEASINLIES VNLSPIRPFP PPLQFHTSLL SYGQCVDLFY QDAWWEGVIF
0101: DHQNGALNRR IFFPDMGDEI NAQLHNLRIT QDWDQVSQQW NPRGTWMFLQ IIHEIENLHP LFVSLKQIWY QIREKNAYKY LKEWTSTSAD IWRNLINQVV
0201: HENAILTVKH FFCESNTSPG FLEGGPLLEF SQPTETYFHN SAILPFIEAI CKSISGEMMC MDREVSCIDK KLVSEGFGPI SDNVPLSASA LFSSVLPSQE
0301: ELQAVSPNAL PVLHPPKNEI SGTSSITKSE RLNFESSNKI HSRKRKRVEW MTIAHVAELC PDAVSEYNDN YMSNHRSPES LQKLKIHLFH LGWKIEQPKD
0401: RSITRTRYIA PDGKIFQSLR QVCKMLEKSE TWAEDQKTSY DGSSDDLNLS TCLAKTKTRS QVSELPYTSQ EPIIDPEICR EAVIEYCSRG SPGNPAYKKL
0501: NSGEKKFTIM KAKKHLAAIG WIFYYYRGRD KRELRYHSPH GKTFNTLLGA CRWCMQQWKA EEQMPELFSQ STVLEYQGNL APQRTSCEKL SAATFAVLPL
0601: AKEPAQLNKV KVCEISKTRK KTIHGGGMLK KENESRSSRT VTDGTESESS VGLLRSSKKA RQGTLYSSLH HTPRTVLSWL IDNNVVLPRA KVQYRGKRDG
0701: RPMAEGRITR AGIKCKCCQK VYGISSFEVH AGSSYHRPSA NIYLEDGRSL LDCQLQMKEK TSLRHTRKRT PLLKKRSHLG TNDYVCSVCH YGGELLLCDE
0801: CPSSFHTGCL GMKEIPDGEW FCPSCCCETC GESRFDKNKD QFTDSSLLIC FQCDNKYHAR CIRNKGFQKL DYHPVGSWFC NKRCEQICLG IRQLLAKPVV
0901: VGIDNLTWTL LKYVKPDDFD SDAANDEFIL ETYSKLSVAL DVMHECFEPV KEPYTRRDLI EDVIFNRWSE LNRLNFQGFY TVLLERNDEV ISVATVRVYG
1001: EKVAEVPLVA TRFQYRRLGM CRVLMNELEK KLLELGVERL VLPAVPTVLN TWTTSFGFSL VKESQRLNFL NYTFLDFQGT TMCQKLLQNI PPEVSSESTE
1101: AYQTQFDHIN SKENVELDGN SALSEVFQAE QIEESAIVDQ GSTDAPGGFE SNNNTDAPAP FSTVANQQSP LGCQDETSLQ YQAEVSDSKV LEKTGVVEYI
1201: CYKRRKRYPD CGC
0101: DHQNGALNRR IFFPDMGDEI NAQLHNLRIT QDWDQVSQQW NPRGTWMFLQ IIHEIENLHP LFVSLKQIWY QIREKNAYKY LKEWTSTSAD IWRNLINQVV
0201: HENAILTVKH FFCESNTSPG FLEGGPLLEF SQPTETYFHN SAILPFIEAI CKSISGEMMC MDREVSCIDK KLVSEGFGPI SDNVPLSASA LFSSVLPSQE
0301: ELQAVSPNAL PVLHPPKNEI SGTSSITKSE RLNFESSNKI HSRKRKRVEW MTIAHVAELC PDAVSEYNDN YMSNHRSPES LQKLKIHLFH LGWKIEQPKD
0401: RSITRTRYIA PDGKIFQSLR QVCKMLEKSE TWAEDQKTSY DGSSDDLNLS TCLAKTKTRS QVSELPYTSQ EPIIDPEICR EAVIEYCSRG SPGNPAYKKL
0501: NSGEKKFTIM KAKKHLAAIG WIFYYYRGRD KRELRYHSPH GKTFNTLLGA CRWCMQQWKA EEQMPELFSQ STVLEYQGNL APQRTSCEKL SAATFAVLPL
0601: AKEPAQLNKV KVCEISKTRK KTIHGGGMLK KENESRSSRT VTDGTESESS VGLLRSSKKA RQGTLYSSLH HTPRTVLSWL IDNNVVLPRA KVQYRGKRDG
0701: RPMAEGRITR AGIKCKCCQK VYGISSFEVH AGSSYHRPSA NIYLEDGRSL LDCQLQMKEK TSLRHTRKRT PLLKKRSHLG TNDYVCSVCH YGGELLLCDE
0801: CPSSFHTGCL GMKEIPDGEW FCPSCCCETC GESRFDKNKD QFTDSSLLIC FQCDNKYHAR CIRNKGFQKL DYHPVGSWFC NKRCEQICLG IRQLLAKPVV
0901: VGIDNLTWTL LKYVKPDDFD SDAANDEFIL ETYSKLSVAL DVMHECFEPV KEPYTRRDLI EDVIFNRWSE LNRLNFQGFY TVLLERNDEV ISVATVRVYG
1001: EKVAEVPLVA TRFQYRRLGM CRVLMNELEK KLLELGVERL VLPAVPTVLN TWTTSFGFSL VKESQRLNFL NYTFLDFQGT TMCQKLLQNI PPEVSSESTE
1101: AYQTQFDHIN SKENVELDGN SALSEVFQAE QIEESAIVDQ GSTDAPGGFE SNNNTDAPAP FSTVANQQSP LGCQDETSLQ YQAEVSDSKV LEKTGVVEYI
1201: CYKRRKRYPD CGC
001: MLGVIEDNLK ITIDQFLHDF DAERYPQLKL LNEASQAVYE TNACLSGMLT IAPQEHQFSC IDKDFKPASQ RCQSLSVLTS VSGIRSEASD INKATEISSK
101: KSTAAHKKDI LHKKPGIWHP FDCLAKSGPQ AVSSFIRSPL LPMAMHVRMH LKYMGWTIEH MVDEAGRQRF RYLSPNGRLK EHSLRQVCFR LKQPDKSLTT
201: PGMANPPSLS SENQTYSTQE MRSIVLALPA FNRSVALGEG LKLSTDTLLE YETQGNEEVF TRESRNFCPK KAFPGQKETL RVRIEPKTKA QGIILRLKSK
301: RKQTPKKDEV IVGLQNVNRS MRRGHTSKKL MDIKNRVTSR GKTRVLRSRK RAQRVITPIS RKHSPRNILS WLMDNNVVLP RENIRCCNQK DTTVRKEGKL
401: TREGIKCSCC RRVFTINGFE VHANGASCSG AANIFLDDGR SLLECQVEAY KKRKKAQPPD MLKMKLRQGE NDVFCSVCHY GGKLILCDGC PSAFHANCLG
501: LEDVPDGDWF CQSCCCGACG QFFLKTTSTN AKEEKFISCK QCELKYHPSC LRYDGACDSL DKILGEKWFC SKDCEEIFVI LYDLIGKPRE VSVEKLTWRL
601: VQSLEPNMYG DDASKIEAAA ENHCILSVAL DVMHELFEPV KRPHGGRDLA EDVIFSRWSK FKRLNFSGFY TVLLERNNEL VSVATVRILG KKVAEMPFIG
701: TRFQHRQRGM CRVLINELEK VLIDLGVERL VLPAVPCVLN TWINSFGFTK MTISERKNFL KFTLLEFGRT ILCEKILIKS GVADPIPSIA SLGEQQCDIL
801: RIEDNSASDD GSEVHQAEQH LEESRSTKNP PEEIKTQEER LLIKKENRIV KFYSRRRSKC MRLT
101: KSTAAHKKDI LHKKPGIWHP FDCLAKSGPQ AVSSFIRSPL LPMAMHVRMH LKYMGWTIEH MVDEAGRQRF RYLSPNGRLK EHSLRQVCFR LKQPDKSLTT
201: PGMANPPSLS SENQTYSTQE MRSIVLALPA FNRSVALGEG LKLSTDTLLE YETQGNEEVF TRESRNFCPK KAFPGQKETL RVRIEPKTKA QGIILRLKSK
301: RKQTPKKDEV IVGLQNVNRS MRRGHTSKKL MDIKNRVTSR GKTRVLRSRK RAQRVITPIS RKHSPRNILS WLMDNNVVLP RENIRCCNQK DTTVRKEGKL
401: TREGIKCSCC RRVFTINGFE VHANGASCSG AANIFLDDGR SLLECQVEAY KKRKKAQPPD MLKMKLRQGE NDVFCSVCHY GGKLILCDGC PSAFHANCLG
501: LEDVPDGDWF CQSCCCGACG QFFLKTTSTN AKEEKFISCK QCELKYHPSC LRYDGACDSL DKILGEKWFC SKDCEEIFVI LYDLIGKPRE VSVEKLTWRL
601: VQSLEPNMYG DDASKIEAAA ENHCILSVAL DVMHELFEPV KRPHGGRDLA EDVIFSRWSK FKRLNFSGFY TVLLERNNEL VSVATVRILG KKVAEMPFIG
701: TRFQHRQRGM CRVLINELEK VLIDLGVERL VLPAVPCVLN TWINSFGFTK MTISERKNFL KFTLLEFGRT ILCEKILIKS GVADPIPSIA SLGEQQCDIL
801: RIEDNSASDD GSEVHQAEQH LEESRSTKNP PEEIKTQEER LLIKKENRIV KFYSRRRSKC MRLT
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LUZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.