Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g071550.1.1 | Tomato | nucleus | 36.18 | 12.77 |
| Solyc08g078120.1.1 | Tomato | nucleus | 13.24 | 11.03 |
| Solyc09g031580.2.1 | Tomato | nucleus | 37.35 | 10.47 |
| Zm00001d022583_P001 | Maize | nucleus | 20.88 | 10.14 |
| TraesCS2A01G085100.1 | Wheat | nucleus | 18.53 | 9.78 |
| TraesCS2D01G083000.1 | Wheat | nucleus | 18.24 | 9.6 |
| TraesCS2B01G099800.1 | Wheat | nucleus | 18.24 | 9.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.29 | 8.94 |
| GSMUA_Achr6P32880_001 | Banana | nucleus | 25.0 | 8.02 |
| Solyc03g005170.2.1 | Tomato | nucleus | 22.65 | 6.97 |
| Zm00001d028749_P002 | Maize | mitochondrion | 25.88 | 6.91 |
| Zm00001d008232_P001 | Maize | cytosol | 6.47 | 6.88 |
| Solyc07g062600.2.1 | Tomato | nucleus | 20.29 | 6.05 |
| TraesCS4B01G194600.1 | Wheat | nucleus | 22.65 | 5.67 |
| TraesCS4D01G195300.1 | Wheat | nucleus | 22.65 | 5.67 |
| Solyc11g066480.1.1 | Tomato | nucleus | 17.65 | 5.64 |
| TraesCS4A01G109600.1 | Wheat | nucleus | 22.06 | 5.52 |
| Solyc09g076010.2.1 | Tomato | nucleus | 21.76 | 5.43 |
| Solyc10g083800.1.1 | Tomato | nucleus | 14.41 | 5.41 |
| Solyc09g008520.2.1 | Tomato | nucleus | 14.41 | 5.27 |
| Solyc09g065340.2.1 | Tomato | nucleus | 18.82 | 4.71 |
| Solyc10g084650.1.1 | Tomato | nucleus | 14.12 | 3.56 |
| KXG31496 | Sorghum | cytosol, extracellular | 0.0 | 0.0 |
| HORVU4Hr1G056300.1 | Barley | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc06g082050.1.1 | EnsemblPlantsGene:Solyc06g082050.1 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013083 | InterPro:Jas | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42672 | PANTHER:PTHR42672:SF9 |
| PFAM:PF16135 | SEG:seg | SUPFAM:SSF57903 | UniParc:UPI0002765596 | UniProt:K4CA64 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6:+:48001235..48002406
Molecular Weight (calculated)
38603.1 Da
IEP (calculated)
8.576
GRAVY (calculated)
-0.769
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MERPTSREVP ELHKETISET EERGIQLEKE LEEAEIPQQE TGNHNEETNT EPEEPMIEPE ICRQAVIDYC LPKSHTSAYQ KSYRNGVKIR DTALKAKTYL
101: VANGWKLIPL GNNDQRIRYL PPEGEKPFLS FRGACNWCVQ KWKAESHLPS SQSAVVDKPL ISILRESRKK RKHADVKSKS SLKKGDGDMR SSKRARKVAP
201: SSSNQIPRTV LSWLIDKNVV LPRAKVKYCE LKNGNPMAQG RITREGIKCN CCQKIFGLRN FEAHAGSICN RPSANIYLED GRSLLECQMQ MKRKHSTENK
301: ESSHFTENDY ICSVCHYGGD LILCDGCPSS FHPDCLGIKI
101: VANGWKLIPL GNNDQRIRYL PPEGEKPFLS FRGACNWCVQ KWKAESHLPS SQSAVVDKPL ISILRESRKK RKHADVKSKS SLKKGDGDMR SSKRARKVAP
201: SSSNQIPRTV LSWLIDKNVV LPRAKVKYCE LKNGNPMAQG RITREGIKCN CCQKIFGLRN FEAHAGSICN RPSANIYLED GRSLLECQMQ MKRKHSTENK
301: ESSHFTENDY ICSVCHYGGD LILCDGCPSS FHPDCLGIKI
001: MPAAEEEEPI FGWNSTGRRN LRRKKLLDGD KIEVRSLEEG SLGSWYLGTV TSAKKRRRRC IRYDNILSDD GSGNLVETVD VSDIVEGLDD CTDVSDTFRG
101: RLRPVPPKLD VAKLNLAYGL CVDVFFSDAW WEGVLFDHEN GSEKRRVFFP DLGDELDADL QSLRITQDWN EATETWECRG SWLFLDLIEI YKEYNYLPVS
201: VKQLWYDIRD RIGFVRIQEW TCSTKHLWQD LMLGVIEDNL KITIDQFLHD FDAERYPQLK LLNEASQAVY ETNACLSGML TIAPQEHQFS CIDKDFKPAS
301: QRCQSLSVLT SVSGIRSEAS DINKATEISS KKSTAAHKKD ILHKKPGIWH PFDCLAKSGP QAVSSFIRSP LLPMAMHVRM HLKYMGWTIE HMVDEAGRQR
401: FRYLSPNGRL KEHSLRQVCF RLKQPDKSLT TPGMANPPSL SSENQTYSTQ EMRSIVLALP AFNRSVALGE GLKLSTDTLL EYETQGNEEV FTRESRNFCP
501: KKAFPGQKET LRVRIEPKTK AQGIILRLKS KRKQTPKKDE VIVGLQNVNR SMRRGHTSKK LMDIKNRVTS RGKTRVLRSR KRAQRVITPI SRKHSPRNIL
601: SWLMDNNVVL PRENIRCCNQ KDTTVRKEGK LTREGIKCSC CRRVFTINGF EVHANGASCS GAANIFLDDG RSLLECQVEA YKKRKKAQPP DMLKMKLRQG
701: ENDVFCSVCH YGGKLILCDG CPSAFHANCL GLEDVPDGDW FCQSCCCGAC GQFFLKTTST NAKEEKFISC KQCELKYHPS CLRYDGACDS LDKILGEKWF
801: CSKDCEEIFV ILYDLIGKPR EVSVEKLTWR LVQSLEPNMY GDDASKIEAA AENHCILSVA LDVMHELFEP VKRPHGGRDL AEDVIFSRWS KFKRLNFSGF
901: YTVLLERNNE LVSVATVRIL GKKVAEMPFI GTRFQHRQRG MCRVLINELE KVFSLLLKT
101: RLRPVPPKLD VAKLNLAYGL CVDVFFSDAW WEGVLFDHEN GSEKRRVFFP DLGDELDADL QSLRITQDWN EATETWECRG SWLFLDLIEI YKEYNYLPVS
201: VKQLWYDIRD RIGFVRIQEW TCSTKHLWQD LMLGVIEDNL KITIDQFLHD FDAERYPQLK LLNEASQAVY ETNACLSGML TIAPQEHQFS CIDKDFKPAS
301: QRCQSLSVLT SVSGIRSEAS DINKATEISS KKSTAAHKKD ILHKKPGIWH PFDCLAKSGP QAVSSFIRSP LLPMAMHVRM HLKYMGWTIE HMVDEAGRQR
401: FRYLSPNGRL KEHSLRQVCF RLKQPDKSLT TPGMANPPSL SSENQTYSTQ EMRSIVLALP AFNRSVALGE GLKLSTDTLL EYETQGNEEV FTRESRNFCP
501: KKAFPGQKET LRVRIEPKTK AQGIILRLKS KRKQTPKKDE VIVGLQNVNR SMRRGHTSKK LMDIKNRVTS RGKTRVLRSR KRAQRVITPI SRKHSPRNIL
601: SWLMDNNVVL PRENIRCCNQ KDTTVRKEGK LTREGIKCSC CRRVFTINGF EVHANGASCS GAANIFLDDG RSLLECQVEA YKKRKKAQPP DMLKMKLRQG
701: ENDVFCSVCH YGGKLILCDG CPSAFHANCL GLEDVPDGDW FCQSCCCGAC GQFFLKTTST NAKEEKFISC KQCELKYHPS CLRYDGACDS LDKILGEKWF
801: CSKDCEEIFV ILYDLIGKPR EVSVEKLTWR LVQSLEPNMY GDDASKIEAA AENHCILSVA LDVMHELFEP VKRPHGGRDL AEDVIFSRWS KFKRLNFSGF
901: YTVLLERNNE LVSVATVRIL GKKVAEMPFI GTRFQHRQRG MCRVLINELE KVFSLLLKT
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LUZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.