Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032367 | Potato | nucleus | 39.53 | 92.99 |
| Os04t0691700-01 | Rice | nucleus | 15.69 | 45.43 |
| Zm00001d012354_P001 | Maize | cytosol | 11.13 | 40.32 |
| CDX98519 | Canola | nucleus | 35.23 | 35.99 |
| Bra027290.1-P | Field mustard | nucleus | 34.97 | 35.82 |
| CDX97621 | Canola | nucleus | 34.71 | 35.55 |
| AT3G14980.2 | Thale cress | nucleus | 36.81 | 35.32 |
| VIT_19s0014g01500.t01 | Wine grape | nucleus | 42.94 | 34.6 |
| KRH27324 | Soybean | nucleus | 37.86 | 32.95 |
| KRH21991 | Soybean | nucleus | 37.34 | 32.42 |
| GSMUA_Achr6P25440_001 | Banana | nucleus | 26.91 | 32.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.33 | 28.7 |
| KXG24184 | Sorghum | nucleus | 25.68 | 28.7 |
| Zm00001d026698_P011 | Maize | nucleus | 27.26 | 23.23 |
| OQU82646 | Sorghum | nucleus | 27.26 | 22.82 |
| Os04t0433900-00 | Rice | nucleus | 27.43 | 22.63 |
| EES12185 | Sorghum | nucleus | 27.26 | 22.57 |
| Zm00001d003648_P002 | Maize | nucleus | 26.73 | 22.41 |
| Solyc08g078120.1.1 | Tomato | nucleus | 7.8 | 21.81 |
| Solyc03g005170.2.1 | Tomato | nucleus | 20.42 | 21.11 |
| TraesCS2A01G305000.1 | Wheat | cytosol | 27.52 | 20.89 |
| TraesCS2B01G321800.1 | Wheat | nucleus | 27.43 | 20.8 |
| HORVU2Hr1G075850.12 | Barley | cytosol, nucleus | 26.99 | 20.38 |
| Solyc06g082050.1.1 | Tomato | nucleus | 6.05 | 20.29 |
| TraesCS2B01G622700.1 | Wheat | nucleus | 28.48 | 19.84 |
| TraesCS2A01G563500.2 | Wheat | nucleus | 28.05 | 19.7 |
| TraesCS2D01G571900.2 | Wheat | nucleus | 28.48 | 19.48 |
| HORVU2Hr1G126690.2 | Barley | nucleus | 27.08 | 19.43 |
| Solyc03g071550.1.1 | Tomato | nucleus | 16.39 | 19.42 |
| TraesCS2D01G303600.2 | Wheat | cytosol | 27.34 | 19.42 |
| Solyc09g076010.2.1 | Tomato | nucleus | 21.65 | 18.11 |
| Solyc09g065340.2.1 | Tomato | nucleus | 20.42 | 17.13 |
| Solyc09g031580.2.1 | Tomato | nucleus | 17.44 | 16.41 |
| Solyc10g083800.1.1 | Tomato | nucleus | 12.01 | 15.12 |
| Solyc09g008520.2.1 | Tomato | nucleus | 12.01 | 14.73 |
| Solyc11g066480.1.1 | Tomato | nucleus | 13.06 | 14.0 |
| Solyc10g084650.1.1 | Tomato | nucleus | 12.09 | 10.23 |
Protein Annotations
| MapMan:12.5.3.2.2 | MapMan:15.5.30 | Gene3D:3.30.40.10 | InterPro:Acyl_CoA_acyltransferase | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0010385 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0035556 |
| GO:GO:0042393 | GO:GO:0043971 | GO:GO:0043972 | GO:GO:0044030 | GO:GO:0044154 | GO:GO:0046872 |
| GO:GO:0080188 | InterPro:IDM1 | InterPro:IPR002219 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:Jas |
| UniProt:K4CGU3 | InterPro:PE/DAG-bd | PFAM:PF16135 | PFscan:PS50016 | PFscan:PS50081 | PANTHER:PTHR42672 |
| PANTHER:PTHR42672:SF1 | SMART:SM00249 | SUPFAM:SSF55729 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc07g062600.2 | EnsemblPlants:Solyc07g062600.2.1 |
| UniParc:UPI000276B842 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Increased DNA methylation 1 [Source:Projected from Arabidopsis thaliana (AT3G14980) UniProtKB/Swiss-Prot;Acc:F4IXE7]
Coordinates
chr7:-:65288847..65296106
Molecular Weight (calculated)
126813.0 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.453
Length
1141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLFNKDIEGL CDDGFDGSGN ETHMFANVHF GNEGDTKKCL VTGMIDFEGD LTSQTDEPGH LCGENFVLTA HHDSHDIKED SGEDPCEREL TNNHVEKESE
0101: PLPSLDIVPA DITPQPSSCP SLNVICHVVE SSNQGVKSSS YLQKRHNVLD KSHVLGEMES SVLRSSKIEG NGWKDVVGKG IASPPSQESY AIGSAAKSSG
0201: ILRPSKPKWR DHCFVELDES ELLTIKDSPN DPRPLLRHHI HRLLRAAGWV IGRRKRNNKF HGIGEYVYKS PEGRPIREFW RAWTLCGQSL LTYADGIFPE
0301: KDCTLWSDMT QFLSDLSVSV KEIDKELATL ETASALARLW SLLDPFVTVV FIDKALRSLK EGKTIKAKMT LATAPVKNHI KNVDDTGNLF ADERTLQNQP
0401: CSSSFVSDSA LNETDKWIHE DYGDESSLNL TEPQMGEGKC INGVSCDYPN ERSMCLRDTV SEGANKYRKL LKNESSVLKR EVLKKSKKLS EMESANGQDD
0501: QCDPSGRKSG VHEVITSKQN SGPKKRKKCR LSDDDLLISA VFRNTTCKSG NKRSSGKIKP LRKRKNQKSG GKLLLRSLIK GGKHFPEEKW PTFASRTVLS
0601: WLIHSGVVSL NEMIQYQNLK DDSVVKTGYI TADGISCNCC DEVLSISSFK KHAGFKHNRP CLNLFMENGK PFTLCQLEAW SDEYKARRAV SQTSQAEERD
0701: QNDDSCGRCG DGGELICCDN CPATFHLACL FTQELPEGSW YCSQCTCQKC GDVVRCSESS SPGGYKCSQC EHKYHEACSD LRITKTGLAS DTWFCSESCQ
0801: EVYEGLHSRI GFVNHLADGF SWTILRCILG DHKVHSQRFI ALKAECNSKL AVALTIMEEC FLPMVDPRTG IDMIPHVIYS WGSQFSRLNY LGFYTMILEK
0901: DDISVAVASV RIHGVTVAEM PLIATCSKYR RQGMCRRLLN SILEMLKSFK VEKLVISAIP GLVETWTCGF GFEPLEDHEK RSLSHINLMV FPGTVWLKKS
1001: LFQAADADQP SVCPGGNGLT IIESMQHCVP SQDVNAGADV RDPPQSESLQ FCEDEGGSNQ DLGQGCEGNT INPEHQTETR LPDSNDLQPV EVLCVVDALP
1101: SKCSKLSEEP VLTYISHGEA GCRVDNLQMN VDSHFCLDEV N
0101: PLPSLDIVPA DITPQPSSCP SLNVICHVVE SSNQGVKSSS YLQKRHNVLD KSHVLGEMES SVLRSSKIEG NGWKDVVGKG IASPPSQESY AIGSAAKSSG
0201: ILRPSKPKWR DHCFVELDES ELLTIKDSPN DPRPLLRHHI HRLLRAAGWV IGRRKRNNKF HGIGEYVYKS PEGRPIREFW RAWTLCGQSL LTYADGIFPE
0301: KDCTLWSDMT QFLSDLSVSV KEIDKELATL ETASALARLW SLLDPFVTVV FIDKALRSLK EGKTIKAKMT LATAPVKNHI KNVDDTGNLF ADERTLQNQP
0401: CSSSFVSDSA LNETDKWIHE DYGDESSLNL TEPQMGEGKC INGVSCDYPN ERSMCLRDTV SEGANKYRKL LKNESSVLKR EVLKKSKKLS EMESANGQDD
0501: QCDPSGRKSG VHEVITSKQN SGPKKRKKCR LSDDDLLISA VFRNTTCKSG NKRSSGKIKP LRKRKNQKSG GKLLLRSLIK GGKHFPEEKW PTFASRTVLS
0601: WLIHSGVVSL NEMIQYQNLK DDSVVKTGYI TADGISCNCC DEVLSISSFK KHAGFKHNRP CLNLFMENGK PFTLCQLEAW SDEYKARRAV SQTSQAEERD
0701: QNDDSCGRCG DGGELICCDN CPATFHLACL FTQELPEGSW YCSQCTCQKC GDVVRCSESS SPGGYKCSQC EHKYHEACSD LRITKTGLAS DTWFCSESCQ
0801: EVYEGLHSRI GFVNHLADGF SWTILRCILG DHKVHSQRFI ALKAECNSKL AVALTIMEEC FLPMVDPRTG IDMIPHVIYS WGSQFSRLNY LGFYTMILEK
0901: DDISVAVASV RIHGVTVAEM PLIATCSKYR RQGMCRRLLN SILEMLKSFK VEKLVISAIP GLVETWTCGF GFEPLEDHEK RSLSHINLMV FPGTVWLKKS
1001: LFQAADADQP SVCPGGNGLT IIESMQHCVP SQDVNAGADV RDPPQSESLQ FCEDEGGSNQ DLGQGCEGNT INPEHQTETR LPDSNDLQPV EVLCVVDALP
1101: SKCSKLSEEP VLTYISHGEA GCRVDNLQMN VDSHFCLDEV N
0001: MLPGAEIEML GGDCFEGSYE DHQIFREVFF GSDPGNTTKR CLVTGAINFE CDSSKNVNSS LSSNSVVTSG YACPQGFEAS ASRDGSDFNT KAKRVKLSGN
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
Arabidopsis Description
IDM1Increased DNA methylation 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IXE7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.