Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0691700-01 | Rice | nucleus | 36.08 | 44.42 |
| Solyc07g062600.2.1 | Tomato | nucleus | 92.99 | 39.53 |
| Zm00001d012354_P001 | Maize | cytosol | 25.36 | 39.05 |
| GSMUA_Achr6P25440_001 | Banana | nucleus | 42.27 | 21.65 |
| PGSC0003DMT400067527 | Potato | nucleus | 25.77 | 20.1 |
| PGSC0003DMT400028730 | Potato | nucleus | 20.62 | 19.46 |
| CDX98519 | Canola | nucleus | 44.74 | 19.43 |
| Bra027290.1-P | Field mustard | nucleus | 44.33 | 19.3 |
| CDX97621 | Canola | nucleus | 44.12 | 19.21 |
| AT3G14980.2 | Thale cress | nucleus | 46.19 | 18.84 |
| KXG24184 | Sorghum | nucleus | 38.76 | 18.41 |
| KRH27324 | Soybean | nucleus | 48.04 | 17.77 |
| KRH21991 | Soybean | nucleus | 48.04 | 17.73 |
| VIT_19s0014g01500.t01 | Wine grape | nucleus | 50.31 | 17.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.1 | 14.5 |
| OQU82646 | Sorghum | nucleus | 38.97 | 13.87 |
| Zm00001d026698_P011 | Maize | nucleus | 38.14 | 13.82 |
| PGSC0003DMT400043562 | Potato | nucleus | 25.36 | 13.38 |
| EES12185 | Sorghum | nucleus | 36.7 | 12.92 |
| Zm00001d003648_P002 | Maize | nucleus | 36.08 | 12.86 |
| Os04t0433900-00 | Rice | nucleus | 35.88 | 12.58 |
| TraesCS2A01G305000.1 | Wheat | cytosol | 37.32 | 12.04 |
| TraesCS2B01G622700.1 | Wheat | nucleus | 40.21 | 11.9 |
| HORVU2Hr1G126690.2 | Barley | nucleus | 38.97 | 11.89 |
| TraesCS2A01G563500.2 | Wheat | nucleus | 39.79 | 11.88 |
| TraesCS2B01G321800.1 | Wheat | nucleus | 36.7 | 11.83 |
| HORVU2Hr1G075850.12 | Barley | cytosol, nucleus | 36.7 | 11.78 |
| TraesCS2D01G571900.2 | Wheat | nucleus | 39.79 | 11.57 |
| TraesCS2D01G303600.2 | Wheat | cytosol | 36.7 | 11.08 |
| PGSC0003DMT400009969 | Potato | nucleus | 20.82 | 10.72 |
| PGSC0003DMT400056776 | Potato | nucleus | 25.36 | 10.11 |
| PGSC0003DMT400001219 | Potato | nucleus | 21.44 | 9.82 |
| PGSC0003DMT400072425 | Potato | nucleus | 13.2 | 8.34 |
| PGSC0003DMT400091155 | Potato | nucleus | 1.03 | 2.51 |
Protein Annotations
| MapMan:12.5.3.2.2 | MapMan:15.5.30 | Gene3D:3.30.40.10 | Gene3D:3.40.630.30 | InterPro:Acyl_CoA_acyltransferase | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 | InterPro:IDM1 | InterPro:IPR002219 |
| InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1AXB1 | InterPro:PE/DAG-bd | EnsemblPlantsGene:PGSC0003DMG400012431 | PGSC:PGSC0003DMG400012431 |
| EnsemblPlants:PGSC0003DMT400032367 | PFscan:PS50016 | PFscan:PS50081 | PANTHER:PTHR42672 | PANTHER:PTHR42672:SF1 | SMART:SM00249 |
| SUPFAM:SSF55729 | SUPFAM:SSF57903 | UniParc:UPI00029652E4 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012431]
Coordinates
chr7:-:52735489..52742279
Molecular Weight (calculated)
53836.8 Da
IEP (calculated)
5.047
GRAVY (calculated)
-0.286
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGKPFTLC QLEAWSDEYK ARRAVSQTSQ AEERDQNDDS CGRCGDGGEL ICCDNCPATF HLACLFTQEL PEGSWYCSQC TCQKCGDVVK CSEASSPGGY
101: KCSQCEHKYH EACSNLRITK SGLASDTWFC SESCQEVYEG LHSRIGFVNH LADGISWTLL RCIHGDHKVH SQRFIALKAE CNSKLAVSLT IMEECFLPMV
201: DPRTGIDMIP HVIYSWGSQF ARLNYLGFYT MILEKDDISV AVASVRIHGV TVAEMPLIAT CSKYRRQGMC RRLLNSILEM LKSFKVEKLV ISAIPGVVET
301: WTCGFGFEPL EDHEKRSLSH INLMVFPGTV WLKKSLFQVA DADQPSVRPG GTVSCHENGL TIIEPMQHCM PSQDVNAGAD VRHPPQSESF QFCEDQGGSN
401: LAGHELRQGC EGNTINPERQ TETGLPDSND LQPVEVQYVV DALPGKCSKL SEEPVLTYIS HGEAGCRVDN LQMNVDSHFC LDEVN
101: KCSQCEHKYH EACSNLRITK SGLASDTWFC SESCQEVYEG LHSRIGFVNH LADGISWTLL RCIHGDHKVH SQRFIALKAE CNSKLAVSLT IMEECFLPMV
201: DPRTGIDMIP HVIYSWGSQF ARLNYLGFYT MILEKDDISV AVASVRIHGV TVAEMPLIAT CSKYRRQGMC RRLLNSILEM LKSFKVEKLV ISAIPGVVET
301: WTCGFGFEPL EDHEKRSLSH INLMVFPGTV WLKKSLFQVA DADQPSVRPG GTVSCHENGL TIIEPMQHCM PSQDVNAGAD VRHPPQSESF QFCEDQGGSN
401: LAGHELRQGC EGNTINPERQ TETGLPDSND LQPVEVQYVV DALPGKCSKL SEEPVLTYIS HGEAGCRVDN LQMNVDSHFC LDEVN
0001: MLPGAEIEML GGDCFEGSYE DHQIFREVFF GSDPGNTTKR CLVTGAINFE CDSSKNVNSS LSSNSVVTSG YACPQGFEAS ASRDGSDFNT KAKRVKLSGN
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
Arabidopsis Description
IDM1Increased DNA methylation 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IXE7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.