Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032367 | Potato | nucleus | 21.65 | 42.27 |
| Os04t0433900-00 | Rice | nucleus | 41.71 | 28.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.99 | 28.2 |
| Zm00001d003648_P002 | Maize | nucleus | 40.23 | 27.99 |
| EES12185 | Sorghum | nucleus | 40.34 | 27.72 |
| Solyc07g062600.2.1 | Tomato | nucleus | 32.42 | 26.91 |
| CDX98519 | Canola | nucleus | 30.41 | 25.78 |
| TraesCS2A01G305000.1 | Wheat | cytosol | 40.87 | 25.75 |
| Bra027290.1-P | Field mustard | nucleus | 30.2 | 25.67 |
| CDX97621 | Canola | nucleus | 30.2 | 25.67 |
| TraesCS2B01G321800.1 | Wheat | nucleus | 40.55 | 25.51 |
| HORVU2Hr1G075850.12 | Barley | cytosol, nucleus | 40.44 | 25.35 |
| AT3G14980.2 | Thale cress | nucleus | 30.83 | 24.56 |
| TraesCS2D01G303600.2 | Wheat | cytosol | 40.97 | 24.14 |
| VIT_19s0014g01500.t01 | Wine grape | nucleus | 35.9 | 24.01 |
| GSMUA_Achr4P21300_001 | Banana | nucleus | 20.59 | 23.81 |
| KRH21991 | Soybean | nucleus | 32.63 | 23.52 |
| KRH27324 | Soybean | nucleus | 32.31 | 23.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.37 | 16.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.41 | 15.58 |
| GSMUA_Achr4P12040_001 | Banana | nucleus | 13.41 | 14.51 |
| GSMUA_Achr6P32880_001 | Banana | nucleus | 15.63 | 13.96 |
| GSMUA_Achr6P33300_001 | Banana | plastid | 9.71 | 13.92 |
| GSMUA_Achr5P02880_001 | Banana | nucleus | 21.01 | 13.54 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 3.38 | 10.29 |
Protein Annotations
| MapMan:12.5.3.2.2 | MapMan:15.5.30 | Gene3D:3.30.40.10 | Gene3D:3.40.630.30 | InterPro:Acyl_CoA_acyltransferase | InterPro:GNAT_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008080 | GO:GO:0016740 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr6G25440_001 | EnsemblPlants:GSMUA_Achr6P25440_001 | EnsemblPlants:GSMUA_Achr6T25440_001 | InterPro:IDM1 | InterPro:IPR000182 | InterPro:IPR013083 |
| InterPro:IPR019787 | InterPro:Jas | UniProt:M0TA40 | PFAM:PF00583 | PFAM:PF16135 | PFscan:PS50016 |
| PFscan:PS51186 | PANTHER:PTHR42672 | PANTHER:PTHR42672:SF1 | SMART:SM00249 | SUPFAM:SSF55729 | SUPFAM:SSF57903 |
| UniParc:UPI00029566A8 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G25440_001]
Coordinates
chr6:+:26519890..26529418
Molecular Weight (calculated)
105497.0 Da
IEP (calculated)
7.942
GRAVY (calculated)
-0.355
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIKKTLLNT PNSKTVDVGG NRALPTDLST SLRSHAHHLL MDAGWKICIH SRKDGRKFDL IYYPPAEGAQ LYSLSRAWIS CGVELSANTS NIREEESGRV
101: WTDINAFSGD LADVLEFIKM EIRHPENSLS LLQRWVLLDP FVAVVCINKK ISALRKGTAV KAVNSMTTVL GGTESLGLLR SDVNGVLHNS RSLCSSERSL
201: LSDIVSDGKS SALGLVHPKE KRSHQDTDSL SKKAQLGRVD TQAFNAKEVT EQHRSSCSKG GHRVESSMEY PVAHENEVIE ERKRTSGSYG NLSTANQSSQ
301: HQMNEQHNVL LYPPGGTLFF TMDDNQREPL LAHLVTTNAN GSTNIHQQVQ PLVYQANLVT GVFSNSGCLK ESSLEKKKSN SMLYNISISQ EPHRESCLHT
401: SVILLDGKLP FSGNNLEVSK VKRPEIFKEN KQKQQSKGHA NDDDLFIATI VKRKGCRSAS REIISKVGSL DASEKLRSRN GDHKLFQNNA GEGGKISNVK
501: RSIGRRTVLC RLIEMGVISV RNTFQYCELK DSTVVKDGRV TKNGILCRCC KKFFSISEFK LHAGDMLQKP CLNLFLRSGK SYVLCQLQAW SLEYKTRKDA
601: IPVMDDEETE QNDDTCGHCG DGGELICCDN CPSSYHQACL LSKELPEDRW YCPNCICDVC GVVVNIMEAP SAMATLECSQ CQHRYHDKCI KEKVTRNEEV
701: ASRTWFCGVD CQEVYLGLRS LVGVMNCVGD GFSSTVLRCN HGDKTLQSAE EIAVVAECNM KLAIALSIME ECFLPMVDLK TGIDMIPHIL YNWGSKLPRL
801: NYKGFYTAVL EKNDELISVA SIRIHSVKVA EMPLIATRSE HRRRGMCRRL LAAIEEMLKS LKVEMLVLSA IPTLVETWTS VFGFKQLEDT EKWLQNIDLM
901: SFPGTVLLKK SLYDATTKTS ATNDEVPTRP SSSGMQGMMK DGNTQER
101: WTDINAFSGD LADVLEFIKM EIRHPENSLS LLQRWVLLDP FVAVVCINKK ISALRKGTAV KAVNSMTTVL GGTESLGLLR SDVNGVLHNS RSLCSSERSL
201: LSDIVSDGKS SALGLVHPKE KRSHQDTDSL SKKAQLGRVD TQAFNAKEVT EQHRSSCSKG GHRVESSMEY PVAHENEVIE ERKRTSGSYG NLSTANQSSQ
301: HQMNEQHNVL LYPPGGTLFF TMDDNQREPL LAHLVTTNAN GSTNIHQQVQ PLVYQANLVT GVFSNSGCLK ESSLEKKKSN SMLYNISISQ EPHRESCLHT
401: SVILLDGKLP FSGNNLEVSK VKRPEIFKEN KQKQQSKGHA NDDDLFIATI VKRKGCRSAS REIISKVGSL DASEKLRSRN GDHKLFQNNA GEGGKISNVK
501: RSIGRRTVLC RLIEMGVISV RNTFQYCELK DSTVVKDGRV TKNGILCRCC KKFFSISEFK LHAGDMLQKP CLNLFLRSGK SYVLCQLQAW SLEYKTRKDA
601: IPVMDDEETE QNDDTCGHCG DGGELICCDN CPSSYHQACL LSKELPEDRW YCPNCICDVC GVVVNIMEAP SAMATLECSQ CQHRYHDKCI KEKVTRNEEV
701: ASRTWFCGVD CQEVYLGLRS LVGVMNCVGD GFSSTVLRCN HGDKTLQSAE EIAVVAECNM KLAIALSIME ECFLPMVDLK TGIDMIPHIL YNWGSKLPRL
801: NYKGFYTAVL EKNDELISVA SIRIHSVKVA EMPLIATRSE HRRRGMCRRL LAAIEEMLKS LKVEMLVLSA IPTLVETWTS VFGFKQLEDT EKWLQNIDLM
901: SFPGTVLLKK SLYDATTKTS ATNDEVPTRP SSSGMQGMMK DGNTQER
0001: MLPGAEIEML GGDCFEGSYE DHQIFREVFF GSDPGNTTKR CLVTGAINFE CDSSKNVNSS LSSNSVVTSG YACPQGFEAS ASRDGSDFNT KAKRVKLSGN
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
0101: KHLDARDEKG SALHGFPTSD IARETIPLHL VESSNKGVST SSYLLKHSIV KGREVYLGGI VSGKCKSLNL DKCDGKEFKA IASPVSQESF ATRMISVGAS
0201: TPHSEKACFP LQLNNGSKVS PNELIMSKTC LKIDPKEDPR PLLYKYVCKV LTAARWKIEK RERSAGRKHV DTFYISPEGR KFREFGSAWK ALGGILLADR
0301: KLMDTGTKKW TGINDFWSDL SLTLLDIEEN MKNLNLANTR ALWWSALEPF VVVVFISKQV GSLRKGNKVE VARNSNPDKL KKEDTICLNL ISGCPESVLT
0401: VSEGSHLVHD VDANQEIHSD LEVQTKISSQ KVSSRLERQS IIGKEISGTH EQEASKGIVA SKLIAEDMHE SVMRKNLHRR SKKISDIKPA SLDQHDSLDS
0501: NSLNSFEFQD KEMGNIHLVS KGSRDERLRN EKMNNSCCNS KKGRKKARKH YTQDDDLMGS TITRNKGKFS RSSQKKKTQK PKARTKKRNN RGGCRLLPRS
0601: SSNVENHFFQ GNWSILGPRT VLSWLIATKV ISRDEVIQLR DPDDDTVVKT GLVTKDGVVC TCCNKTVSLS EFKNHAGFNQ NCPCLNLFMG SGKPFASCQL
0701: EAWSAEYKAR RNGWRLEKAS DDDPNDDSCG VCGDGGELIC CDNCPSTFHQ ACLSMQVLPE GSWYCSSCTC WICSELVSDN AERSQDFKCS QCAHKYHGTC
0801: LQGISKRRKL FPETYFCGKN CEKVYNGLSS RVGIINPNAD GLSWSILKCF QEDGMVHSAR RLALKAECNS KLAVALSIME ESFLSMVDPR TGIDMIPHVL
0901: YNWGSTFARL DFDGFYTVVV EKDDVMISVA SIRVHGVTIA EMPLVATCSK YRRQGMCRIL VAAIEEMLMS LKVEKLVVAA LPSLVETWTE GFGFKPMDDE
1001: ERDALKRINL MVFPGTTLLK KTLYESTKPS TMKGVCLSKE RNNPSNKEAD LEPGLDKAGS PMSTQVESCD QMVPAGSDDE PSPGFPVPLG ADQTEPTSET
1101: ENPSRDSNAN DRPNKTTVVS IGEEEEEECL QKDVSKLSEE GKETTRASSS SAALEEVSGL GLGVVNNVSD EMLLCVDEQL DSDSSQDSE
Arabidopsis Description
IDM1Increased DNA methylation 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IXE7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.