Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0151g00870.t01 | Wine grape | nucleus | 100.0 | 9.41 |
| VIT_05s0020g03420.t01 | Wine grape | nucleus | 3.29 | 0.35 |
| PGSC0003DMT400067527 | Potato | nucleus | 0.0 | 0.0 |
| Solyc08g078120.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| VIT_02s0234g00060.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_06s0004g06800.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_06s0004g06810.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_06s0061g00820.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_06s0061g00830.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 0.0 | 0.0 |
| VIT_06s0061g00840.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_08s0007g04490.t01 | Wine grape | mitochondrion | 0.0 | 0.0 |
| VIT_08s0040g03340.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_19s0014g01500.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.50 | EntrezGene:100245272 | wikigene:100245272 | EntrezGene:100254425 | wikigene:100254425 | EntrezGene:100855135 |
| wikigene:100855135 | MapMan:17.1.3.1.20 | InterPro:30s_Rbsml_prot_S13_C | Gene3D:4.10.910.10 | ProteinID:CCB50423 | ProteinID:CCB50423.1 |
| UniProt:F6HDQ2 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0042254 | InterPro:IPR001892 |
| InterPro:IPR027437 | EntrezGene:LOC100245272 | wikigene:LOC100245272 | EntrezGene:LOC100254425 | wikigene:LOC100254425 | EntrezGene:LOC100855135 |
| wikigene:LOC100855135 | HAMAP:MF_01315 | PFAM:PF00416 | PIRSF:PIRSF002134 | ScanProsite:PS00646 | PFscan:PS50159 |
| PANTHER:PTHR10871 | PANTHER:PTHR10871:SF19 | InterPro:Ribosomal_S13 | InterPro:Ribosomal_S13-like_H2TH | InterPro:Ribosomal_S13_CS | SUPFAM:SSF46946 |
| TIGR:TC53096 | UniParc:UPI00019832A5 | ArrayExpress:VIT_05s0020g03450 | EnsemblPlantsGene:VIT_05s0020g03450 | EnsemblPlants:VIT_05s0020g03450.t01 | unigene:Vvi.1917 |
| RefSeq:XP_002262702.1 | RefSeq:XP_002282412 | RefSeq:XP_002282412.1 | RefSeq:XP_003632303 | RefSeq:XP_003632303.1 | SEG:seg |
Description
No Description!
Coordinates
chr5:+:5212925..5215561
Molecular Weight (calculated)
17620.6 Da
IEP (calculated)
11.327
GRAVY (calculated)
-0.665
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRF ANIVCKKADV DMNKRAGELS AAELENLMVI VANPRQFKIP DWFLNRKKDY KDGRYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
Arabidopsis Description
RPS18B40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P34788]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.