Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G55660.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G55660.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035582.1-P | Field mustard | nucleus | 80.64 | 69.77 |
| CDY20754 | Canola | nucleus | 76.71 | 66.37 |
| CDY28645 | Canola | nucleus | 64.34 | 55.74 |
| CDY17352 | Canola | extracellular, vacuole | 64.05 | 53.14 |
| CDX94304 | Canola | nucleus | 33.77 | 53.09 |
| AT5G55660.1 | Thale cress | nucleus | 59.39 | 52.44 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 37.7 | 43.24 |
| CDX89318 | Canola | nucleus | 41.78 | 40.77 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 20.23 | 39.94 |
| Solyc07g065490.2.1 | Tomato | nucleus | 36.39 | 39.43 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 37.26 | 37.48 |
| Solyc10g006000.2.1 | Tomato | nucleus | 29.99 | 37.18 |
| KRH46360 | Soybean | nucleus | 39.45 | 36.62 |
| KRG98507 | Soybean | nucleus | 38.14 | 35.65 |
| CDY69625 | Canola | nucleus | 14.85 | 34.93 |
| CDY37915 | Canola | nucleus | 19.94 | 32.39 |
| CDX77921 | Canola | nucleus | 19.8 | 31.92 |
| KRH46364 | Soybean | nucleus | 37.12 | 31.6 |
| KRG98502 | Soybean | nucleus | 33.19 | 31.23 |
| CDY39861 | Canola | nucleus | 16.3 | 31.02 |
| CDY62886 | Canola | nucleus | 21.11 | 29.84 |
| CDY41517 | Canola | nucleus | 20.96 | 29.39 |
| EER91265 | Sorghum | nucleus | 26.49 | 28.22 |
| Zm00001d033159_P001 | Maize | nucleus | 18.05 | 27.74 |
| CDX81185 | Canola | nucleus | 22.56 | 27.68 |
| CDY05865 | Canola | plastid | 12.81 | 27.5 |
| Zm00001d013757_P010 | Maize | nucleus | 26.06 | 27.41 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 12.66 | 27.1 |
| CDY16716 | Canola | nucleus | 21.54 | 26.62 |
| Os03t0596900-01 | Rice | nucleus | 26.93 | 26.32 |
| CDX97358 | Canola | nucleus | 45.85 | 25.97 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 26.78 | 18.93 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 26.64 | 18.71 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 26.2 | 18.16 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 26.2 | 17.96 |
| OQU91413 | Sorghum | nucleus | 23.44 | 11.92 |
Protein Annotations
| EnsemblPlants:CDY06563 | EnsemblPlantsGene:GSBRNA2T00122687001 | Gene3D:1.10.10.60 | GO:A0A078F4F6 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | ProteinID:CDY06563 | ProteinID:CDY06563.1 | SEG:seg |
| SUPFAM:SSF109715 | UniParc:UPI0004EEE5F5 | MapMan:35.2 | : | : | : |
Description
BnaC02g12870D
Coordinates
chrLK031971:-:344523..348931
Molecular Weight (calculated)
76052.0 Da
IEP (calculated)
4.811
GRAVY (calculated)
-1.486
Length
687 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEDTHTKV TVEPTANGTS SLPKPSDAIT GKQAVENASG KETHETKKNE DAAPEKMEID EEKNEGEDKE AEAEKEKEKE NKAETEKTQE KNIAKTEEDN
101: GKPEADKMED EDTDGKKLEA DDGVSGAATE EDTEMKEAVV SEDNKDVKGA KNEGVDKIDA TKGGQDKAEK ESEEEKLELG KVNGNEEEDK EEEKLADSKK
201: SSKREKGKNE KARGKTQSEK EKKDTEPKTP YSSDRPVRER KSVERLVAVV DKDSSKEFQV EKGKGTPLKD IPNVANKIAR RKPDDLLKLL HTILFGGRRG
301: KAAQVKANIL RFSGYKWQGD EEKAKDKVKE KLDKCNKEKL LEFCDLFDIS VGKATRKKKE DIVAKLFDFL EKPHATTDDL VNEEEEKSAK RKRTPKKSSQ
401: AAGSSSSKRS AKSQKKTDEA TRSDKKSLTH SDDESEEEEE EEEKVEEEEE AEEEEEEENE NGIPDKSDDE APQPSESEEN VESEEESEEE TKKKKRVSRT
501: VSGGKKESAA AGKSRSKKAA VSEKPSPPPK KVTQKRSAGK RKKFDDDDTE TSPKASSSKR KKTEKPAKEQ SSVPSKSASK EKAGKRGGKG KDKNKEPSDE
601: ELKTAIVDIL KVVDFNTATF SDILKRLVGK FDIDLTSKKS SIKLMIQDEL TKLADEADAE EGEEEDAEKE REKAGGGSGG GGEEVKA
101: GKPEADKMED EDTDGKKLEA DDGVSGAATE EDTEMKEAVV SEDNKDVKGA KNEGVDKIDA TKGGQDKAEK ESEEEKLELG KVNGNEEEDK EEEKLADSKK
201: SSKREKGKNE KARGKTQSEK EKKDTEPKTP YSSDRPVRER KSVERLVAVV DKDSSKEFQV EKGKGTPLKD IPNVANKIAR RKPDDLLKLL HTILFGGRRG
301: KAAQVKANIL RFSGYKWQGD EEKAKDKVKE KLDKCNKEKL LEFCDLFDIS VGKATRKKKE DIVAKLFDFL EKPHATTDDL VNEEEEKSAK RKRTPKKSSQ
401: AAGSSSSKRS AKSQKKTDEA TRSDKKSLTH SDDESEEEEE EEEKVEEEEE AEEEEEEENE NGIPDKSDDE APQPSESEEN VESEEESEEE TKKKKRVSRT
501: VSGGKKESAA AGKSRSKKAA VSEKPSPPPK KVTQKRSAGK RKKFDDDDTE TSPKASSSKR KKTEKPAKEQ SSVPSKSASK EKAGKRGGKG KDKNKEPSDE
601: ELKTAIVDIL KVVDFNTATF SDILKRLVGK FDIDLTSKKS SIKLMIQDEL TKLADEADAE EGEEEDAEKE REKAGGGSGG GGEEVKA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.