Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006000.2.1 | Tomato | nucleus | 80.75 | 50.72 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 51.72 | 30.05 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 57.18 | 29.14 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 24.14 | 26.17 |
| KRG98507 | Soybean | nucleus | 47.99 | 22.72 |
| PGSC0003DMT400069255 | Potato | nucleus | 31.32 | 22.02 |
| CDX94304 | Canola | nucleus | 27.59 | 21.97 |
| KRH46360 | Soybean | nucleus | 45.98 | 21.62 |
| PGSC0003DMT400081181 | Potato | nucleus | 33.33 | 21.28 |
| KRH46364 | Soybean | nucleus | 47.13 | 20.32 |
| CDY06563 | Canola | nucleus | 39.94 | 20.23 |
| KRG98502 | Soybean | nucleus | 39.37 | 18.77 |
| Zm00001d013757_P010 | Maize | nucleus | 35.06 | 18.68 |
| AT4G26630.1 | Thale cress | nucleus | 40.52 | 18.48 |
| EER91265 | Sorghum | nucleus | 34.2 | 18.45 |
| Os03t0596900-01 | Rice | nucleus | 36.49 | 18.07 |
| CDY28645 | Canola | nucleus | 39.94 | 17.53 |
| CDY20754 | Canola | nucleus | 39.37 | 17.25 |
| Bra035582.1-P | Field mustard | nucleus | 39.37 | 17.25 |
| CDY17352 | Canola | extracellular, vacuole | 40.8 | 17.15 |
| AT5G55660.1 | Thale cress | nucleus | 38.22 | 17.1 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 41.67 | 16.76 |
| Bra026415.1-P | Field mustard | nucleus | 39.66 | 16.53 |
| CDX89318 | Canola | nucleus | 33.33 | 16.48 |
| Zm00001d033159_P001 | Maize | nucleus | 17.24 | 13.42 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 31.9 | 11.42 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 31.61 | 11.1 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 31.9 | 11.08 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 31.03 | 11.04 |
| CDX97358 | Canola | nucleus | 38.22 | 10.96 |
| Bra010432.1-P | Field mustard | nucleus | 33.62 | 10.34 |
| OQU91413 | Sorghum | nucleus | 25.57 | 6.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400037344 | EnsemblPlantsGene:PGSC0003DMG401014410 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | PFAM:PF08766 | PGSC:PGSC0003DMG401014410 | SEG:seg | SUPFAM:SSF109715 | TMHMM:TMhelix |
| UniParc:UPI0002950C83 | UniProt:M1B590 | MapMan:35.2 | : | : | : |
Description
Transporter [Source:PGSC_GENE;Acc:PGSC0003DMG401014410]
Coordinates
chr10:-:995079..998381
Molecular Weight (calculated)
39375.0 Da
IEP (calculated)
7.578
GRAVY (calculated)
-1.179
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKDNMLFPL YFFFTFFLLI LCVYSSFPLQ AAQFKSNISQ FSGFVWHENE EKQKMKVKEK LDKCVKEKLL ELCDVLDIPV DEDTSRKEDL ESQLMDFLDA
101: PHPTTSELLA ENEQSSKGKK KKNPSSTIGS LEGSTKSHKK KKTHEPKDDQ ERSDDEMSKQ TKSEEKDGKS EEGSEKDKKK HKRSSNKSSK KESAGEVKTK
201: KTPSNSSKSS KKNDNNDANP KVHSKKKTTE VVKGNSSTPK KPSSKDNTGK KVPNGKGHKK ADKLKPSDDE LRSAICEVLK EVDFNTATFT DIVQILAKRY
301: DTDLTPRKIS VKNMIQDELT RLVDEADEED EEENAEDEKQ PSVQGVEA
101: PHPTTSELLA ENEQSSKGKK KKNPSSTIGS LEGSTKSHKK KKTHEPKDDQ ERSDDEMSKQ TKSEEKDGKS EEGSEKDKKK HKRSSNKSSK KESAGEVKTK
201: KTPSNSSKSS KKNDNNDANP KVHSKKKTTE VVKGNSSTPK KPSSKDNTGK KVPNGKGHKK ADKLKPSDDE LRSAICEVLK EVDFNTATFT DIVQILAKRY
301: DTDLTPRKIS VKNMIQDELT RLVDEADEED EEENAEDEKQ PSVQGVEA
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.