Factsheet for PGSC0003DMT400048013

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g112050.2.1	Tomato	nucleus	93.87	96.29
PGSC0003DMT400043330	Potato	mitochondrion	65.83	74.47
VIT_03s0038g03260.t01	Wine grape	cytosol	54.11	60.84
KRH14028	Soybean	cytosol	45.13	56.21
KRH74089	Soybean	cytosol	48.08	56.07
CDY17530	Canola	cytosol	42.94	55.21
CDX76322	Canola	cytosol	41.95	54.17
AT2G17110.1	Thale cress	nucleus	43.48	54.16
Bra009665.1-P	Field mustard	cytosol	41.4	53.47
CDX88008	Canola	nucleus	41.84	53.43
CDX69122	Canola	nucleus	43.92	53.4
CDY07877	Canola	cytosol	41.51	53.01
CDX75484	Canola	cytosol, plastid	40.2	52.65
Bra020807.1-P	Field mustard	nucleus	43.92	52.56
Bra011597.1-P	Field mustard	nucleus	46.99	51.32
AT4G35240.1	Thale cress	nucleus	47.43	50.06
GSMUA_Achr1P18120_001	Banana	cytosol	34.17	45.88
GSMUA_Achr3P14690_001	Banana	nucleus	34.83	45.17
GSMUA_Achr11P...	Banana	mitochondrion	32.53	44.2
Os02t0669900-01	Rice	cytosol	20.48	43.79
GSMUA_Achr7P04020_001	Banana	cytosol	31.54	41.14
HORVU2Hr1G096140.2	Barley	cytosol	16.76	40.91
Os04t0562800-00	Rice	cytosol, mitochondrion	24.53	40.88
Os09t0547300-01	Rice	nucleus	41.07	40.81
EER97130	Sorghum	nucleus	40.74	40.74
Zm00001d006286_P001	Maize	nucleus	39.98	39.93
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	28.59	39.61
Zm00001d021452_P001	Maize	nucleus	40.64	39.43
Zm00001d017553_P001	Maize	cytosol	32.09	38.91
OQU85656	Sorghum	cytosol	32.53	38.77
TraesCS5B01G348100.1	Wheat	nucleus	39.98	38.02
HORVU7Hr1G057760.4	Barley	cytosol	27.27	38.02
PGSC0003DMT400045246	Potato	mitochondrion	10.84	37.93
Os08t0551200-00	Rice	cytosol	33.63	37.9
TraesCS5A01G347200.1	Wheat	nucleus	39.76	37.85
TraesCS5D01G353500.1	Wheat	nucleus	39.76	37.66
HORVU5Hr1G086500.2	Barley	nucleus	39.87	37.6
HORVU6Hr1G064670.13	Barley	nucleus	31.11	37.37
TraesCS6B01G271800.1	Wheat	nucleus	31.0	37.14
TraesCS6D01G235200.1	Wheat	nucleus	31.0	37.09
KXG26898	Sorghum	cytosol	32.2	37.07
Zm00001d002669_P002	Maize	cytosol	31.98	37.01
TraesCS6A01G253600.1	Wheat	nucleus	30.78	36.83
TraesCS7D01G273600.1	Wheat	cytosol	32.53	36.67
TraesCS7B01G171500.1	Wheat	cytosol	31.65	36.22
TraesCS2B01G423500.1	Wheat	cytosol	30.34	36.16
Zm00001d026130_P001	Maize	nucleus	30.89	35.74
TraesCS2D01G402400.1	Wheat	cytosol	29.68	35.7
TraesCS2A01G405700.1	Wheat	cytosol	29.57	35.48
HORVU2Hr1G096180.1	Barley	cytosol	23.22	34.64
TraesCS7A01G273600.1	Wheat	cytosol, mitochondrion, nucleus	32.09	31.24
PGSC0003DMT400015690	Potato	nucleus	22.56	26.96
PGSC0003DMT400046483	Potato	cytosol	21.14	26.22
PGSC0003DMT400053154	Potato	nucleus	20.48	26.04
PGSC0003DMT400009224	Potato	nucleus	9.97	23.04
PGSC0003DMT400005111	Potato	nucleus	18.62	22.11
PGSC0003DMT400037619	Potato	plastid	14.13	19.97
PGSC0003DMT400066867	Potato	nucleus	16.1	17.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400048013	EnsemblPlantsGene:PGSC0003DMG400018656	EntrezGene:102602806	InterPro:DUF630	InterPro:DUF632	ncoils:Coil
PANTHER:PTHR21450	PANTHER:PTHR21450:SF2	PFAM:PF04782	PFAM:PF04783	PGSC:PGSC0003DMG400018656	RefSeq:XP_006364524.1
RefSeq:XP_006364525.1	SEG:seg	UniParc:UPI000296EE09	UniProt:M1BLT1	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018656]

Coordinates

chr1:+:87900905..87908481

Molecular Weight (calculated)

100843.0 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.679

Length

913 amino acids

Sequence
(BLAST)

001: MGCATSKHDD LPAVALCRER CAFLDQAIHH RYAFAEAHVA YLHSLKSVGA SLHRFFQHDL DLSSSSSGSP LSPLLHLPAH RKGHLPEPSS ALPHPVKKPA
101: APIHHPHDSH SSSGSHLHFH SESDEDDDSG SESLHHHTET PTHGNQYGQF TYADHETLGF GAPPYQVGGG GGGGFGPPYQ VAGGGGFGPP YQVAGGGGFG
201: PPYQVGEAGG GFGAPYQVGG GGGGFGAPYQ VGGGGFGAPY QVGGGGGGFM HMNFMRKQTT PSVTYHQRPI SPETVRMGEA SSSYYPYPNS NNPNSYNNYP
301: NYPNYAGDFF SSSIQRPYGV SSPPAPSGAG PSSAPSTSKP PPPPPSPPRT SPWDFLNPFE TFESNNYPTP YTPSRDSREV REEEGIPDLE DEDFEHEVVK
401: EVHGHQKFVE GESESEGHGG NHSKAVAEEE REKQSDSESL YHGRPSASME NEQVEFEVHV VDKKVVDEEG KSGHGGNVAG FKARAFKDDS DVVKEIQVQF
501: ELASESGNEL AKMLEVGKLP HNRKNATYQV SSKMLHAISP SLSVVSSQPS TSKNAAIQIN DPAASDVEGD VSSRYKNLSS TLNKLYLWEK KLYQEVKSEE
601: KIRVLHERKS EKLKRLDQKG AEAHKVDMTR QLVRSLSTKI RIAIQVVDKI SEKINKMRDE ELWPQLNILI QGLSKMWKGM LECHRNQCQA IGEAKRLDAI
701: ASHKHLSDAH LEATLQLEHE LLNWTLRFSC WVNAQKGYVR ALNTWLMKCL LYVPEETADG RVPFSPGRIG APPIFVICNQ WSQTIEGVSE KEVVDCMRDF
801: ASNVLQLWER DKHEMRQRMM VHKDMERKVK NLEREDQKIQ KGIHALDKRI VLISGDETGL SLNRHVVYQS DTSKNSSLQV GLRHIFEAME RFTAKSLKVY
901: EELLQRIEED DLA

Best Arabidopsis Sequence Match ( AT4G35240.3 )
(BLAST)

001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.