Factsheet for TraesCS6A01G253600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G271800.1	Wheat	nucleus	96.07	96.19
TraesCS6D01G235200.1	Wheat	nucleus	95.41	95.41
HORVU6Hr1G064670.13	Barley	nucleus	92.14	92.5
Os02t0669900-01	Rice	cytosol	44.43	79.39
Zm00001d017553_P001	Maize	cytosol	69.07	69.99
OQU85656	Sorghum	cytosol	69.72	69.45
TraesCS2A01G405700.1	Wheat	cytosol	55.31	55.45
GSMUA_Achr11P...	Banana	mitochondrion	37.88	43.01
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	34.73	40.21
CDX76322	Canola	cytosol	34.47	37.2
CDY17530	Canola	cytosol	34.08	36.62
Bra009665.1-P	Field mustard	cytosol	33.42	36.07
CDX88008	Canola	nucleus	33.68	35.94
CDY07877	Canola	cytosol	33.68	35.94
AT2G17110.1	Thale cress	nucleus	34.47	35.88
Bra020807.1-P	Field mustard	nucleus	35.39	35.39
CDX75484	Canola	cytosol, plastid	32.24	35.29
KRH14028	Soybean	cytosol	33.16	34.52
KRH74089	Soybean	cytosol	34.86	33.97
PGSC0003DMT400043330	Potato	mitochondrion	35.78	33.83
Solyc10g074470.1.1	Tomato	cytosol	35.52	33.75
Bra011597.1-P	Field mustard	nucleus	36.83	33.61
CDX69122	Canola	nucleus	33.03	33.56
AT4G35240.1	Thale cress	nucleus	37.09	32.72
VIT_03s0038g03260.t01	Wine grape	cytosol	34.34	32.27
Solyc01g112050.2.1	Tomato	nucleus	36.3	31.12
TraesCS5A01G347200.1	Wheat	nucleus	38.93	30.97
PGSC0003DMT400048013	Potato	nucleus	36.83	30.78
VIT_18s0001g00170.t01	Wine grape	cytosol	29.75	30.59
KRH60958	Soybean	cytosol	25.56	29.46
KRH51633	Soybean	cytosol	25.16	28.92
TraesCS7A01G273600.1	Wheat	cytosol, mitochondrion, nucleus	35.39	28.78
CDY31475	Canola	nucleus	21.49	27.24
AT1G20530.1	Thale cress	cytosol	21.63	26.87
TraesCS1A01G264800.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.65	23.65
TraesCS3A01G503100.1	Wheat	cytosol	21.36	22.03
TraesCS5A01G335700.1	Wheat	cytosol	21.23	21.69
TraesCS6A01G154500.2	Wheat	cytosol	17.17	20.76
TraesCS6A01G243100.1	Wheat	mitochondrion	14.94	20.14
TraesCS4A01G376900.1	Wheat	nucleus	18.61	19.29
TraesCS3A01G210200.1	Wheat	nucleus	17.56	19.23
TraesCS1A01G218200.1	Wheat	nucleus	18.61	18.47
TraesCS2A01G099100.1	Wheat	nucleus	12.71	17.86
TraesCS2A01G155900.1	Wheat	nucleus	15.99	16.74
TraesCS5A01G189900.1	Wheat	cytosol	15.2	16.32
TraesCS4A01G128000.1	Wheat	cytosol	17.17	16.07
TraesCS1A01G247500.1	Wheat	nucleus	15.99	15.38
TraesCS7A01G252800.1	Wheat	nucleus	17.17	15.3
TraesCS3A01G198900.1	Wheat	nucleus	15.99	15.04
Bra025823.1-P	Field mustard	peroxisome	22.02	14.63
CDY29526	Canola	peroxisome	21.89	14.53

Protein Annotations

EnsemblPlants:TraesCS6A01G253600.1	EnsemblPlantsGene:TraesCS6A01G253600	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF16	PFAM:PF04782	PFAM:PF04783	SEG:seg	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:+:469425953..469429641

Molecular Weight (calculated)

83417.4 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.398

Length

763 amino acids

Sequence
(BLAST)

001: MGCKGSKLDE QEAVALCRGR ADLLAVAVRH RDALGAAHAA LAGSLLSVSS SLHLLLVSAS ARPRTGITLP VAANAKAVDP PPAAPQPSSP PHSSSHIDFA
101: PSSGSDSGSV ASSPPRRVHD QLHHALPHPH ALLFPHYGYG YGYGYEPEPP FGYPPGSLQL YYARSRPPPA SVAVEQRAPA SERVYFGSSD PAGGNARYYS
201: YGGEATPAGK APAPPPSPPR ASSWDFFNVF DDYQVHDNYC YDAAGAGTTA TTPYTPSRCS RDVREEEGIP ELEEDDAVVK EVSSEHYMTG SGGARSRRSS
301: VGGMSSSEEE NCVVDKGVLS GGGMARQHAP AQPNVSASVR THRKSSESAD FAGEIKAQFV RAADAVWAVA PILEVDRRSY QYHPRSSVYH VSSRMVSTAA
401: LPNSAYGGEE LDVGGWKKVA EGGRSLSVTL QKLYIWEKKL YNEVKSEEKM RLLLAKNSKR LKFLDQKGAE AQKIEATQNL VRKLSAKIRM AVRVIAKVSK
501: KINRVRDEEL CPQIMALIQG FVKMWQEKLD CYQTQCEAIS EAKNLDSTIS GGISRDLAME LEVDLVKWIV NFCSWVNAQR SFVKALNGWL ALCLNYQQEE
601: TPDGAPPYSP GRVGAPLVFV ICNTWSQAMD RISEKEVVTA MQALVSSVRN QCEHRAAVEP SELIFVTRER EKWNRILERK SVEINREADT LNRKLALVPG
701: RQSLLPTAQT YQAHFLEADS LQVSLSRVLQ SLESFASSSL QAFRETLRHA EEEMLSRESV KAS

Best Arabidopsis Sequence Match ( AT1G20530.1 )
(BLAST)

001: MGCSPSKLDG LPAVSLCRDR CSSLEDTLRR SYALADAHSA YLLSLNTVGP ALHRFFQHAV ESPPDVESEA DESPETYSPE SCSSAHSVTS SDSDLPPKFD
101: SDCEEGEGTN CDLLSGSKPE SLNLNHDSFY SRRYESGTIT PPPPPPAPSN YAWDFINFFE SYELPYTTDV NDLKDRETTP SHEEDKLKKK KITVSQNDEK
201: IKVEEEKKTL RISEKNRKRA PKESKDQKVS SDLSEVTKQL QEMFKKASES GNDVSKMFDT SRFRYYQKSS VYQCNVRILL PSSNILYTKK VMTPFDPKPV
301: EESNFNNLSS TLKKLFMWEK KLYQEVKAEE KLRTSHMKNY KLLRRLEAKS ADLSKIEAIR SSIQCLSTRM RVSIHKINNI CLTINKLRDE ELWFQMKELI
401: HRLSEMWNSM LECHSRQSKV IAEAKKLDKM TIKENLDLSQ LELAMELKLE LRNWSLSMSN WIDAQAQYVK ALNNWLMRCL KQEPQEPTPD LSEEPPLFGA
501: INTWSQNLEI SHGEKEFTEA VYTILMHVNH QVEKQRMELE EQRNVNGSVK DIERKLMMLE KEEQKMQRKM KTVPSVALMG SLNLKSNMEQ IFKSMEKLAT
601: NSKQTYEELD LMCT

Arabidopsis Description

F5M15.15 [Source:UniProtKB/TrEMBL;Acc:Q9LMW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.