Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31475 | Canola | nucleus | 73.62 | 75.08 |
| Bra025823.1-P | Field mustard | peroxisome | 74.43 | 39.81 |
| CDY29526 | Canola | peroxisome | 74.27 | 39.69 |
| KRH60958 | Soybean | cytosol | 34.69 | 32.18 |
| KRH51633 | Soybean | cytosol | 33.88 | 31.33 |
| VIT_18s0001g00170.t01 | Wine grape | cytosol | 33.88 | 28.03 |
| HORVU2Hr1G096140.2 | Barley | cytosol | 16.45 | 27.01 |
| AT2G17110.1 | Thale cress | nucleus | 32.08 | 26.88 |
| GSMUA_Achr1P18120_001 | Banana | cytosol | 28.66 | 25.88 |
| Os02t0669900-01 | Rice | cytosol | 17.92 | 25.76 |
| GSMUA_Achr7P04020_001 | Banana | cytosol | 29.32 | 25.71 |
| GSMUA_Achr11P... | Banana | mitochondrion | 27.85 | 25.45 |
| GSMUA_Achr3P14690_001 | Banana | nucleus | 28.83 | 25.14 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, nucleus | 26.87 | 25.04 |
| AT4G35240.1 | Thale cress | nucleus | 33.06 | 23.47 |
| Os04t0562800-00 | Rice | cytosol, mitochondrion | 20.85 | 23.36 |
| OQU85656 | Sorghum | cytosol | 28.99 | 23.24 |
| Zm00001d017553_P001 | Maize | cytosol | 28.01 | 22.84 |
| KXG26898 | Sorghum | cytosol | 28.66 | 22.19 |
| Zm00001d002669_P002 | Maize | cytosol | 28.18 | 21.93 |
| Os08t0551200-00 | Rice | cytosol | 28.83 | 21.85 |
| TraesCS6A01G253600.1 | Wheat | nucleus | 26.87 | 21.63 |
| HORVU6Hr1G064670.13 | Barley | nucleus | 26.71 | 21.58 |
| TraesCS2A01G405700.1 | Wheat | cytosol | 26.71 | 21.55 |
| Zm00001d026130_P001 | Maize | nucleus | 27.69 | 21.55 |
| TraesCS2B01G423500.1 | Wheat | cytosol | 26.87 | 21.54 |
| TraesCS2D01G402400.1 | Wheat | cytosol | 26.55 | 21.48 |
| TraesCS6B01G271800.1 | Wheat | nucleus | 26.55 | 21.39 |
| TraesCS6D01G235200.1 | Wheat | nucleus | 26.38 | 21.23 |
| TraesCS7D01G273600.1 | Wheat | cytosol | 27.85 | 21.11 |
| TraesCS7B01G171500.1 | Wheat | cytosol | 27.2 | 20.93 |
| HORVU2Hr1G096180.1 | Barley | cytosol | 20.36 | 20.42 |
| Zm00001d006286_P001 | Maize | nucleus | 29.97 | 20.13 |
| Os09t0547300-01 | Rice | nucleus | 29.97 | 20.02 |
| EER97130 | Sorghum | nucleus | 29.64 | 19.93 |
| HORVU7Hr1G057760.4 | Barley | cytosol | 21.17 | 19.85 |
| AT4G30130.3 | Thale cress | nucleus | 23.29 | 19.72 |
| TraesCS5B01G348100.1 | Wheat | nucleus | 30.29 | 19.38 |
| Zm00001d021452_P001 | Maize | nucleus | 29.64 | 19.34 |
| AT1G77500.1 | Thale cress | nucleus | 27.69 | 19.34 |
| TraesCS5D01G353500.1 | Wheat | nucleus | 30.29 | 19.29 |
| TraesCS5A01G347200.1 | Wheat | nucleus | 30.13 | 19.29 |
| HORVU5Hr1G086500.2 | Barley | nucleus | 30.29 | 19.21 |
| AT1G02110.1 | Thale cress | nucleus | 21.99 | 19.2 |
| AT5G54480.1 | Thale cress | nucleus | 21.99 | 18.75 |
| TraesCS7A01G273600.1 | Wheat | cytosol, mitochondrion, nucleus | 28.01 | 18.34 |
| AT2G19090.1 | Thale cress | nucleus | 24.27 | 18.3 |
| AT2G27090.2 | Thale cress | nucleus | 21.99 | 18.17 |
| AT1G21740.1 | Thale cress | cytosol | 28.18 | 18.15 |
| AT4G39790.1 | Thale cress | plastid | 19.38 | 18.11 |
| AT2G34670.2 | Thale cress | nucleus | 20.36 | 18.01 |
| AT3G51290.2 | Thale cress | cytosol | 22.8 | 17.54 |
| AT1G52320.5 | Thale cress | nucleus | 22.48 | 17.29 |
| AT5G25590.1 | Thale cress | nucleus | 21.82 | 17.29 |
| AT3G60320.1 | Thale cress | nucleus | 21.01 | 16.21 |
Protein Annotations
| MapMan:35.1 | EntrezGene:838641 | ProteinID:AAF79609.1 | ProteinID:AEE29983.1 | ArrayExpress:AT1G20530 | EnsemblPlantsGene:AT1G20530 |
| RefSeq:AT1G20530 | TAIR:AT1G20530 | RefSeq:AT1G20530-TAIR-G | EnsemblPlants:AT1G20530.1 | TAIR:AT1G20530.1 | ncoils:Coil |
| InterPro:DUF630 | InterPro:DUF632 | RefSeq:NP_173477.1 | PFAM:PF04782 | PFAM:PF04783 | PO:PO:0000037 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009046 | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF19 |
| UniProt:Q9LMW0 | UniParc:UPI000009E350 | SEG:seg | : | : | : |
Description
F5M15.15 [Source:UniProtKB/TrEMBL;Acc:Q9LMW0]
Coordinates
chr1:-:7108203..7110634
Molecular Weight (calculated)
70901.3 Da
IEP (calculated)
6.465
GRAVY (calculated)
-0.752
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSPSKLDG LPAVSLCRDR CSSLEDTLRR SYALADAHSA YLLSLNTVGP ALHRFFQHAV ESPPDVESEA DESPETYSPE SCSSAHSVTS SDSDLPPKFD
101: SDCEEGEGTN CDLLSGSKPE SLNLNHDSFY SRRYESGTIT PPPPPPAPSN YAWDFINFFE SYELPYTTDV NDLKDRETTP SHEEDKLKKK KITVSQNDEK
201: IKVEEEKKTL RISEKNRKRA PKESKDQKVS SDLSEVTKQL QEMFKKASES GNDVSKMFDT SRFRYYQKSS VYQCNVRILL PSSNILYTKK VMTPFDPKPV
301: EESNFNNLSS TLKKLFMWEK KLYQEVKAEE KLRTSHMKNY KLLRRLEAKS ADLSKIEAIR SSIQCLSTRM RVSIHKINNI CLTINKLRDE ELWFQMKELI
401: HRLSEMWNSM LECHSRQSKV IAEAKKLDKM TIKENLDLSQ LELAMELKLE LRNWSLSMSN WIDAQAQYVK ALNNWLMRCL KQEPQEPTPD LSEEPPLFGA
501: INTWSQNLEI SHGEKEFTEA VYTILMHVNH QVEKQRMELE EQRNVNGSVK DIERKLMMLE KEEQKMQRKM KTVPSVALMG SLNLKSNMEQ IFKSMEKLAT
601: NSKQTYEELD LMCT
101: SDCEEGEGTN CDLLSGSKPE SLNLNHDSFY SRRYESGTIT PPPPPPAPSN YAWDFINFFE SYELPYTTDV NDLKDRETTP SHEEDKLKKK KITVSQNDEK
201: IKVEEEKKTL RISEKNRKRA PKESKDQKVS SDLSEVTKQL QEMFKKASES GNDVSKMFDT SRFRYYQKSS VYQCNVRILL PSSNILYTKK VMTPFDPKPV
301: EESNFNNLSS TLKKLFMWEK KLYQEVKAEE KLRTSHMKNY KLLRRLEAKS ADLSKIEAIR SSIQCLSTRM RVSIHKINNI CLTINKLRDE ELWFQMKELI
401: HRLSEMWNSM LECHSRQSKV IAEAKKLDKM TIKENLDLSQ LELAMELKLE LRNWSLSMSN WIDAQAQYVK ALNNWLMRCL KQEPQEPTPD LSEEPPLFGA
501: INTWSQNLEI SHGEKEFTEA VYTILMHVNH QVEKQRMELE EQRNVNGSVK DIERKLMMLE KEEQKMQRKM KTVPSVALMG SLNLKSNMEQ IFKSMEKLAT
601: NSKQTYEELD LMCT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.