Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76322 | Canola | cytosol | 70.06 | 85.71 |
| CDX69122 | Canola | nucleus | 74.22 | 85.49 |
| Bra020807.1-P | Field mustard | nucleus | 74.1 | 84.01 |
| CDY17530 | Canola | cytosol | 68.9 | 83.94 |
| Bra011597.1-P | Field mustard | nucleus | 80.58 | 83.37 |
| CDX75484 | Canola | cytosol, plastid | 65.09 | 80.77 |
| AT2G17110.1 | Thale cress | nucleus | 60.69 | 71.62 |
| KRH14028 | Soybean | cytosol | 48.9 | 57.71 |
| KRH74089 | Soybean | cytosol | 50.98 | 56.32 |
| VIT_03s0038g03260.t01 | Wine grape | cytosol | 48.9 | 52.09 |
| PGSC0003DMT400043330 | Potato | mitochondrion | 48.32 | 51.8 |
| Solyc10g074470.1.1 | Tomato | cytosol | 47.98 | 51.68 |
| Solyc01g112050.2.1 | Tomato | nucleus | 49.94 | 48.54 |
| PGSC0003DMT400048013 | Potato | nucleus | 50.06 | 47.43 |
| Os02t0669900-01 | Rice | cytosol | 21.5 | 43.56 |
| GSMUA_Achr1P18120_001 | Banana | cytosol | 33.87 | 43.09 |
| GSMUA_Achr3P14690_001 | Banana | nucleus | 34.91 | 42.9 |
| HORVU2Hr1G096140.2 | Barley | cytosol | 18.15 | 41.98 |
| GSMUA_Achr7P04020_001 | Banana | cytosol | 33.18 | 41.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.21 | 40.18 |
| Os04t0562800-00 | Rice | cytosol, mitochondrion | 25.2 | 39.78 |
| Zm00001d017553_P001 | Maize | cytosol | 33.99 | 39.04 |
| OQU85656 | Sorghum | cytosol | 34.57 | 39.03 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, nucleus | 29.25 | 38.39 |
| HORVU6Hr1G064670.13 | Barley | nucleus | 32.83 | 37.37 |
| TraesCS6D01G235200.1 | Wheat | nucleus | 32.95 | 37.35 |
| TraesCS6A01G253600.1 | Wheat | nucleus | 32.72 | 37.09 |
| TraesCS2A01G405700.1 | Wheat | cytosol | 32.6 | 37.06 |
| TraesCS6B01G271800.1 | Wheat | nucleus | 32.6 | 37.01 |
| TraesCS2D01G402400.1 | Wheat | cytosol | 32.37 | 36.89 |
| KXG26898 | Sorghum | cytosol | 33.53 | 36.57 |
| TraesCS2B01G423500.1 | Wheat | cytosol | 32.25 | 36.42 |
| Zm00001d002669_P002 | Maize | cytosol | 33.06 | 36.25 |
| HORVU2Hr1G096180.1 | Barley | cytosol | 25.55 | 36.11 |
| Os08t0551200-00 | Rice | cytosol | 33.53 | 35.8 |
| Os09t0547300-01 | Rice | nucleus | 38.03 | 35.8 |
| EER97130 | Sorghum | nucleus | 37.69 | 35.71 |
| Zm00001d026130_P001 | Maize | nucleus | 32.49 | 35.61 |
| HORVU7Hr1G057760.4 | Barley | cytosol | 26.59 | 35.11 |
| Zm00001d006286_P001 | Maize | nucleus | 36.88 | 34.9 |
| Zm00001d021452_P001 | Maize | nucleus | 37.69 | 34.64 |
| TraesCS7D01G273600.1 | Wheat | cytosol | 32.37 | 34.57 |
| TraesCS5B01G348100.1 | Wheat | nucleus | 37.57 | 33.85 |
| TraesCS5D01G353500.1 | Wheat | nucleus | 37.69 | 33.82 |
| TraesCS5A01G347200.1 | Wheat | nucleus | 37.34 | 33.68 |
| TraesCS7B01G171500.1 | Wheat | cytosol | 30.98 | 33.58 |
| HORVU5Hr1G086500.2 | Barley | nucleus | 37.34 | 33.37 |
| AT1G20530.1 | Thale cress | cytosol | 23.47 | 33.06 |
| AT1G77500.1 | Thale cress | nucleus | 31.56 | 31.06 |
| AT1G21740.1 | Thale cress | cytosol | 33.18 | 30.12 |
| TraesCS7A01G273600.1 | Wheat | cytosol, mitochondrion, nucleus | 31.79 | 29.32 |
| AT4G30130.3 | Thale cress | nucleus | 21.39 | 25.52 |
| AT2G19090.1 | Thale cress | nucleus | 22.77 | 24.2 |
| AT4G39790.1 | Thale cress | plastid | 18.38 | 24.2 |
| AT5G54480.1 | Thale cress | nucleus | 20.0 | 24.03 |
| AT2G27090.2 | Thale cress | nucleus | 20.23 | 23.55 |
| AT1G02110.1 | Thale cress | nucleus | 16.76 | 20.63 |
| AT3G51290.2 | Thale cress | cytosol | 18.96 | 20.55 |
| AT2G34670.2 | Thale cress | nucleus | 15.95 | 19.88 |
| AT3G60320.1 | Thale cress | nucleus | 17.8 | 19.35 |
| AT5G25590.1 | Thale cress | nucleus | 16.88 | 18.84 |
| AT1G52320.5 | Thale cress | nucleus | 16.88 | 18.3 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829677 | ProteinID:AEE86483.1 | ProteinID:AEE86484.1 | ArrayExpress:AT4G35240 | EnsemblPlantsGene:AT4G35240 |
| RefSeq:AT4G35240 | TAIR:AT4G35240 | RefSeq:AT4G35240-TAIR-G | EnsemblPlants:AT4G35240.1 | TAIR:AT4G35240.1 | Unigene:At.31430 |
| ncoils:Coil | InterPro:DUF630 | InterPro:DUF632 | UniProt:F4JMA6 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0032774 |
| RefSeq:NP_001190921.1 | RefSeq:NP_195250.2 | PFAM:PF04782 | PFAM:PF04783 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR21450 | PANTHER:PTHR21450:SF2 | UniParc:UPI0001E92EF1 | SEG:seg | : | : |
Description
Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
Coordinates
chr4:-:16760949..16767087
Molecular Weight (calculated)
96031.7 Da
IEP (calculated)
6.125
GRAVY (calculated)
-0.711
Length
865 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEEILGF ARLRLGQKAP FRMMI
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEEILGF ARLRLGQKAP FRMMI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.