Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87081 | Canola | nucleus | 63.61 | 92.32 |
| CDX80528 | Canola | nucleus | 81.29 | 85.95 |
| CDX88193 | Canola | nucleus | 81.42 | 85.62 |
| Bra009853.1-P | Field mustard | nucleus | 80.65 | 85.03 |
| KRH62002 | Soybean | cytosol | 56.9 | 63.09 |
| KRH52653 | Soybean | cytosol | 56.39 | 61.46 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 55.23 | 60.54 |
| Solyc08g068100.2.1 | Tomato | cytosol | 53.03 | 56.69 |
| PGSC0003DMT400037619 | Potato | plastid | 46.71 | 56.04 |
| GSMUA_Achr11P... | Banana | cytosol | 47.23 | 55.45 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 41.16 | 52.9 |
| Zm00001d040901_P001 | Maize | mitochondrion | 16.65 | 50.79 |
| EES18173 | Sorghum | nucleus | 47.87 | 48.37 |
| Os05t0394200-01 | Rice | nucleus | 40.9 | 47.81 |
| AT1G52320.5 | Thale cress | nucleus | 48.52 | 47.12 |
| GSMUA_Achr1P17130_001 | Banana | nucleus | 36.0 | 45.96 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 46.71 | 45.71 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 46.71 | 45.65 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 39.87 | 45.64 |
| Os01t0500500-01 | Rice | nucleus, plasma membrane | 43.61 | 42.41 |
| Zm00001d010488_P008 | Maize | cytosol | 42.84 | 42.19 |
| TraesCS3A01G198900.1 | Wheat | nucleus | 42.84 | 40.94 |
| TraesCS3D01G202100.2 | Wheat | nucleus | 42.58 | 40.74 |
| KXG32552 | Sorghum | nucleus | 41.16 | 40.48 |
| TraesCS3B01G231600.1 | Wheat | cytosol | 41.81 | 39.56 |
| HORVU3Hr1G042920.6 | Barley | cytosol, nucleus | 42.32 | 37.36 |
| AT1G02110.1 | Thale cress | nucleus | 22.84 | 25.18 |
| AT2G34670.2 | Thale cress | nucleus | 20.52 | 22.91 |
| AT3G60320.1 | Thale cress | nucleus | 22.84 | 22.24 |
| AT1G20530.1 | Thale cress | cytosol | 17.29 | 21.82 |
| AT4G39790.1 | Thale cress | plastid | 18.45 | 21.77 |
| AT3G51290.2 | Thale cress | cytosol | 22.19 | 21.55 |
| AT4G30130.3 | Thale cress | nucleus | 18.58 | 19.86 |
| AT2G27090.2 | Thale cress | nucleus | 18.45 | 19.25 |
| AT2G17110.1 | Thale cress | nucleus | 17.55 | 18.55 |
| AT2G19090.1 | Thale cress | nucleus | 18.97 | 18.06 |
| AT4G35240.1 | Thale cress | nucleus | 18.84 | 16.88 |
| AT1G77500.1 | Thale cress | nucleus | 19.1 | 16.84 |
| AT1G21740.1 | Thale cress | cytosol | 19.87 | 16.16 |
| AT5G54480.1 | Thale cress | nucleus | 13.29 | 14.31 |
Protein Annotations
| MapMan:35.1 | EntrezGene:832634 | UniProt:A0A178UHX9 | ProteinID:AED93470.1 | ArrayExpress:AT5G25590 | EnsemblPlantsGene:AT5G25590 |
| RefSeq:AT5G25590 | TAIR:AT5G25590 | RefSeq:AT5G25590-TAIR-G | EnsemblPlants:AT5G25590.1 | TAIR:AT5G25590.1 | EMBL:AY091053 |
| EMBL:AY133786 | Unigene:At.43564 | ncoils:Coil | InterPro:DUF630 | InterPro:DUF632 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016874 | RefSeq:NP_197941.1 | ProteinID:OAO92692.1 | PFAM:PF04782 | PFAM:PF04783 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF7 |
| UniProt:Q8RWW9 | UniParc:UPI00000A542F | SEG:seg | : | : | : |
Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
Coordinates
chr5:-:8906534..8910063
Molecular Weight (calculated)
88370.2 Da
IEP (calculated)
5.150
GRAVY (calculated)
-0.942
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.