Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0394200-01 | Rice | nucleus | 71.32 | 82.5 |
| Zm00001d010488_P008 | Maize | cytosol | 82.79 | 80.69 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 80.31 | 77.68 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 79.79 | 77.27 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 65.45 | 74.15 |
| CDX87081 | Canola | nucleus | 39.37 | 56.55 |
| GSMUA_Achr11P... | Banana | cytosol | 47.46 | 55.15 |
| KRH62002 | Soybean | cytosol | 48.5 | 53.22 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 40.81 | 51.91 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 47.59 | 51.63 |
| KRH52653 | Soybean | cytosol | 47.85 | 51.62 |
| Solyc08g068100.2.1 | Tomato | cytosol | 47.2 | 49.93 |
| CDX80528 | Canola | nucleus | 47.33 | 49.52 |
| CDX88193 | Canola | nucleus | 47.33 | 49.25 |
| Bra009853.1-P | Field mustard | nucleus | 46.94 | 48.98 |
| OQU88702 | Sorghum | cytosol | 27.9 | 48.53 |
| PGSC0003DMT400037619 | Potato | plastid | 40.55 | 48.14 |
| AT5G25590.1 | Thale cress | nucleus | 48.37 | 47.87 |
| KXG32552 | Sorghum | nucleus | 42.63 | 41.5 |
| KXG36086 | Sorghum | nucleus | 22.95 | 26.83 |
| EER94480 | Sorghum | nucleus | 24.25 | 23.69 |
| KXG31098 | Sorghum | cytosol, plastid | 17.86 | 23.66 |
| EES00973 | Sorghum | nucleus | 19.69 | 21.51 |
| EER97113 | Sorghum | cytosol | 19.04 | 20.17 |
| EES08807 | Sorghum | nucleus | 17.99 | 19.19 |
| EES06355 | Sorghum | cytosol | 14.34 | 17.94 |
| EER97130 | Sorghum | nucleus | 20.6 | 17.31 |
| KXG39486 | Sorghum | nucleus | 18.38 | 16.99 |
| OQU85656 | Sorghum | cytosol | 16.95 | 16.97 |
| EES19545 | Sorghum | nucleus | 19.56 | 16.63 |
| OQU80872 | Sorghum | nucleus | 17.21 | 16.58 |
| KXG26898 | Sorghum | cytosol | 16.43 | 15.89 |
| KXG34164 | Sorghum | plastid | 17.99 | 14.87 |
Protein Annotations
| EnsemblPlants:EES18173 | EnsemblPlantsGene:SORBI_3009G127800 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:EES18173 | ProteinID:EES18173.2 | SEG:seg |
| UniParc:UPI00081ACA0A | UniProt:C5YXJ0 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:48124896..48130971
Molecular Weight (calculated)
85998.8 Da
IEP (calculated)
6.167
GRAVY (calculated)
-0.737
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRIEN EEAVARCKER RQLMKAAVAA RNAFAAAHSA YAASLKDTGA ALSEFAHGEG LPPQPPPEAA AETAAPVAAQ GGIGAAAAGA SASGADAIMP
101: PPPPLDSLPP PPPPLPDFSP SPAKIHRSIS MPMPPSSGNK NPGMLRSDSI REEDEDEDEE EREEEEEDDG QLDDRRQRLR HRPPVPPPLS PPPPETPVTP
201: QPPPPPPPHP SEMKAGVDTW DYFFSMDEEI MAEQEDKYVP PSPPRPPHSP PPPAVVPLSE EFEEEPRTPE MATPPASLPP MPAKHSSKKK GKGKLKAAHH
301: QHTESAPPVT LVTGGKAGKV AHAEMPRVDL LRVLAQIDDR FLKASESAGE VSKALEANRM HYHSNFADNR GHIDHSARVM KIITWNRSFK GMQNGDDGKD
401: DFENDELETL ATVVDKILAW EKKLYDEVKA GEIMKLEYQR KVALLNRQKK HNAAIEVLEK TKAAVTHLHT RYIVDMQSMD STVSEIQHLR DNQLYPRLLD
501: LADRMAKMWE DMHMHHANQL ETVLNLKLVD ISDARIETSD YHHSHTRQLR YIVDKWITNF TDLMNYQKEY INTLYSWLKL NLIPIESSLK EKVTSPPRMQ
601: QPPIKAFLQA WNEHLTKLPD DLAKTAIVTF RAVLDTILGV QDEELKQKET CEQTRREYMR KARAFEDWYH KHSQRKASDV DPESGEGIGH KDAVTEKKFA
701: VESLKSRLDD EIESHNKLSK QVREKSLSIL KAHLPELFRA LTDFSSASFD MYSKLRLMSL MQDQGNN
101: PPPPLDSLPP PPPPLPDFSP SPAKIHRSIS MPMPPSSGNK NPGMLRSDSI REEDEDEDEE EREEEEEDDG QLDDRRQRLR HRPPVPPPLS PPPPETPVTP
201: QPPPPPPPHP SEMKAGVDTW DYFFSMDEEI MAEQEDKYVP PSPPRPPHSP PPPAVVPLSE EFEEEPRTPE MATPPASLPP MPAKHSSKKK GKGKLKAAHH
301: QHTESAPPVT LVTGGKAGKV AHAEMPRVDL LRVLAQIDDR FLKASESAGE VSKALEANRM HYHSNFADNR GHIDHSARVM KIITWNRSFK GMQNGDDGKD
401: DFENDELETL ATVVDKILAW EKKLYDEVKA GEIMKLEYQR KVALLNRQKK HNAAIEVLEK TKAAVTHLHT RYIVDMQSMD STVSEIQHLR DNQLYPRLLD
501: LADRMAKMWE DMHMHHANQL ETVLNLKLVD ISDARIETSD YHHSHTRQLR YIVDKWITNF TDLMNYQKEY INTLYSWLKL NLIPIESSLK EKVTSPPRMQ
601: QPPIKAFLQA WNEHLTKLPD DLAKTAIVTF RAVLDTILGV QDEELKQKET CEQTRREYMR KARAFEDWYH KHSQRKASDV DPESGEGIGH KDAVTEKKFA
701: VESLKSRLDD EIESHNKLSK QVREKSLSIL KAHLPELFRA LTDFSSASFD MYSKLRLMSL MQDQGNN
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.