Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G258100.1 | Wheat | nucleus | 96.85 | 96.97 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 79.19 | 92.76 |
| Os05t0394200-01 | Rice | nucleus | 70.62 | 84.46 |
| EES18173 | Sorghum | nucleus | 77.68 | 80.31 |
| Zm00001d010488_P008 | Maize | cytosol | 71.88 | 72.43 |
| GSMUA_Achr11P... | Banana | cytosol | 45.9 | 55.15 |
| CDX87081 | Canola | nucleus | 36.95 | 54.87 |
| KRH62002 | Soybean | cytosol | 47.16 | 53.51 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 46.91 | 52.62 |
| KRH52653 | Soybean | cytosol | 46.91 | 52.32 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 39.6 | 52.07 |
| Solyc08g068100.2.1 | Tomato | cytosol | 45.9 | 50.21 |
| PGSC0003DMT400037619 | Potato | plastid | 39.6 | 48.61 |
| Bra009853.1-P | Field mustard | nucleus | 44.64 | 48.16 |
| CDX80528 | Canola | nucleus | 44.51 | 48.16 |
| CDX88193 | Canola | nucleus | 44.51 | 47.9 |
| AT5G25590.1 | Thale cress | nucleus | 45.65 | 46.71 |
| TraesCS3A01G198900.1 | Wheat | nucleus | 41.61 | 40.69 |
| TraesCS2A01G155900.1 | Wheat | nucleus | 37.2 | 40.47 |
| TraesCS1A01G218200.1 | Wheat | nucleus | 23.96 | 24.71 |
| TraesCS3A01G210200.1 | Wheat | nucleus | 20.81 | 23.67 |
| TraesCS6A01G243100.1 | Wheat | mitochondrion | 16.39 | 22.97 |
| TraesCS5A01G335700.1 | Wheat | cytosol | 18.54 | 19.68 |
| TraesCS4A01G376900.1 | Wheat | nucleus | 17.4 | 18.75 |
| TraesCS2A01G099100.1 | Wheat | nucleus | 12.74 | 18.6 |
| TraesCS6A01G154500.2 | Wheat | cytosol | 14.75 | 18.54 |
| TraesCS5A01G189900.1 | Wheat | cytosol | 16.14 | 18.0 |
| TraesCS4A01G128000.1 | Wheat | cytosol | 17.53 | 17.06 |
| TraesCS5A01G347200.1 | Wheat | nucleus | 20.05 | 16.58 |
| TraesCS2A01G405700.1 | Wheat | cytosol | 15.51 | 16.16 |
| TraesCS1A01G264800.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 18.03 | 16.03 |
| TraesCS6A01G253600.1 | Wheat | nucleus | 15.38 | 15.99 |
| TraesCS7A01G273600.1 | Wheat | cytosol, mitochondrion, nucleus | 17.65 | 14.93 |
| TraesCS7A01G252800.1 | Wheat | nucleus | 15.76 | 14.6 |
| TraesCS3A01G503100.1 | Wheat | cytosol | 13.49 | 14.46 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G247500.1 | EnsemblPlantsGene:TraesCS1A01G247500 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | SUPFAM:SSF101447 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1A:+:439066205..439074449
Molecular Weight (calculated)
88237.1 Da
IEP (calculated)
6.301
GRAVY (calculated)
-0.754
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRIEN EEAVARCKER RQYMKAAVAA RNAFAAAHSA YAFSLRDTGA ALSEFAHGEG VPPPPPPAAA EPSKAARLSA GGTGPAAPGA AAATSADAAV
101: EEAMPPPPPL DSLPPPPPPL PVFSPSPAKI HRSMSMPMAP KAVARGRGPA MLHSDSIREE DDEADMEEEE DEEDDARLDD RRRRLRHRQQ VPPVSPPPPE
201: TPVTPQPPPP PPPPPPPPPI DPKTGVDTWD YFFSMEEGMA SIATEDEEIV PEPEDEKYVP ASPPRPPSSP PPQAVVPPRE EYEEEPRTPE MVTPPPSLPP
301: KAPGQSKKKK GKGKGKGKNK SAHHQHTESA PPVTVVGGWG KAGKVVPAEV PRVDLLQVLA EIDDRFLKAS ESAGEVSKAL EANRMHYHSN FADTRGHIDH
401: SARVMKIITW NRSFRSMQNG DDGKDEFEND EEETLATVID KILAWEKKLY DEVKAGEIMK LEYQRKVALL NRQKRNNAAV EVLEKTKAAV THLHTRYIVD
501: MQSMDSTVSE IQHLRDNQLY PKLLDLADRL AKMWEDMHMN HANQLKTVLD LKSVDISDSS IETSAHHHSH TRQLHDIVDK WNTNFSDLMS YQKEYINALY
601: SWLKLNLIPI ESSLKEKVAS PPRVQQPPVK ALLQAWNEQL AKLPDDLARH AIVSFRAVLE TILGVQDEEL KKKEACEQIH KEYVRKARAF EEWYHKHGQR
701: RTFDDPESGE GTSQKDAISE KRFAVESLKS KLDNEVEAHN KLSKQVREKS LSILRAHLPE LFRALTDFSH ATAEMHSKLR LNALMQDQGS GNN
101: EEAMPPPPPL DSLPPPPPPL PVFSPSPAKI HRSMSMPMAP KAVARGRGPA MLHSDSIREE DDEADMEEEE DEEDDARLDD RRRRLRHRQQ VPPVSPPPPE
201: TPVTPQPPPP PPPPPPPPPI DPKTGVDTWD YFFSMEEGMA SIATEDEEIV PEPEDEKYVP ASPPRPPSSP PPQAVVPPRE EYEEEPRTPE MVTPPPSLPP
301: KAPGQSKKKK GKGKGKGKNK SAHHQHTESA PPVTVVGGWG KAGKVVPAEV PRVDLLQVLA EIDDRFLKAS ESAGEVSKAL EANRMHYHSN FADTRGHIDH
401: SARVMKIITW NRSFRSMQNG DDGKDEFEND EEETLATVID KILAWEKKLY DEVKAGEIMK LEYQRKVALL NRQKRNNAAV EVLEKTKAAV THLHTRYIVD
501: MQSMDSTVSE IQHLRDNQLY PKLLDLADRL AKMWEDMHMN HANQLKTVLD LKSVDISDSS IETSAHHHSH TRQLHDIVDK WNTNFSDLMS YQKEYINALY
601: SWLKLNLIPI ESSLKEKVAS PPRVQQPPVK ALLQAWNEQL AKLPDDLARH AIVSFRAVLE TILGVQDEEL KKKEACEQIH KEYVRKARAF EEWYHKHGQR
701: RTFDDPESGE GTSQKDAISE KRFAVESLKS KLDNEVEAHN KLSKQVREKS LSILRAHLPE LFRALTDFSH ATAEMHSKLR LNALMQDQGS GNN
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.