Factsheet for VIT_04s0008g04200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87081	Canola	nucleus	50.21	66.48
KRH62002	Soybean	cytosol	64.92	65.67
KRH52653	Soybean	cytosol	64.22	63.85
VIT_09s0002g04590.t01	Wine grape	nucleus	52.76	60.95
PGSC0003DMT400037619	Potato	plastid	55.3	60.53
Solyc08g068100.2.1	Tomato	cytosol	60.82	59.31
GSMUA_Achr11P...	Banana	cytosol	54.03	57.88
Bra009853.1-P	Field mustard	nucleus	58.7	56.46
CDX80528	Canola	nucleus	58.42	56.34
CDX88193	Canola	nucleus	58.56	56.17
AT5G25590.1	Thale cress	nucleus	60.54	55.23
GSMUA_Achr3P24800_001	Banana	nucleus	45.69	53.57
Os05t0394200-01	Rice	nucleus	46.11	49.17
GSMUA_Achr1P17130_001	Banana	nucleus	42.01	48.93
EES18173	Sorghum	nucleus	51.63	47.59
TraesCS1B01G258100.1	Wheat	nucleus	53.04	47.35
Zm00001d040901_P001	Maize	mitochondrion	16.97	47.24
TraesCS1A01G247500.1	Wheat	nucleus	52.62	46.91
TraesCS1D01G246700.1	Wheat	nucleus	44.27	46.23
Os01t0500500-01	Rice	nucleus, plasma membrane	46.68	41.41
Zm00001d010488_P008	Maize	cytosol	45.97	41.3
KXG32552	Sorghum	nucleus	44.7	40.1
TraesCS3D01G202100.2	Wheat	nucleus	45.12	39.38
TraesCS3A01G198900.1	Wheat	nucleus	45.12	39.33
TraesCS3B01G231600.1	Wheat	cytosol	44.13	38.1
HORVU3Hr1G042920.6	Barley	cytosol, nucleus	45.12	36.33
VIT_04s0023g03760.t01	Wine grape	mitochondrion	24.33	27.43
VIT_10s0003g04480.t01	Wine grape	nucleus	24.19	26.23
VIT_03s0038g02660.t01	Wine grape	nucleus	21.22	23.04
VIT_07s0031g02650.t01	Wine grape	cytosol	11.32	22.66
VIT_00s0434g00010.t01	Wine grape	nucleus	21.78	21.63
VIT_00s0264g00010.t01	Wine grape	nucleus	21.78	21.24
VIT_00s1403g00010.t01	Wine grape	nucleus	21.78	20.87
VIT_06s0009g01610.t01	Wine grape	nucleus	10.89	20.21
VIT_15s0021g01550.t01	Wine grape	nucleus	23.34	19.53
VIT_06s0009g01600.t01	Wine grape	nucleus	12.87	19.32
VIT_11s0103g00310.t01	Wine grape	nucleus	19.52	17.99
VIT_18s0001g00170.t01	Wine grape	cytosol	18.81	17.92
VIT_03s0038g03260.t01	Wine grape	cytosol	19.94	17.36
VIT_18s0001g02480.t01	Wine grape	nucleus	17.54	15.9

Protein Annotations

EntrezGene:100259547	wikigene:100259547	MapMan:35.1	ProteinID:CCB46743	ProteinID:CCB46743.1	ncoils:Coil
InterPro:DUF630	InterPro:DUF632	UniProt:F6H3F5	EMBL:FN595231	EntrezGene:LOC100259547	wikigene:LOC100259547
PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450	PANTHER:PTHR21450:SF7	UniParc:UPI00015C8C90	ArrayExpress:VIT_04s0008g04200
EnsemblPlantsGene:VIT_04s0008g04200	EnsemblPlants:VIT_04s0008g04200.t01	unigene:Vvi.19683	RefSeq:XP_002281782	RefSeq:XP_002281782.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:3540767..3545451

Molecular Weight (calculated)

80068.8 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.787

Length

707 amino acids

Sequence
(BLAST)

001: MGCAQSRIEN EEAVSRCKER KILMKEALAA RNAFAAGHTG YTMALKNTGA ALNDYGEGEA ENNHDQHLHS AFGTVSEAAA IDATLPPPPP PLPNYSPSPL
101: KRAVSMPELS PVKTPVGLSI PKVIEEDERD DKDELMRRRN GGGAREEEPT PPRTPAMNAV PPPPPDAKGM SWDYFFMVEN MAGTMLTEED EIKGEKNEDE
201: GEVFHEMGNV GGDGGEESGG VEPKTPQKTA EKEDEELVKK AKQLTHANTA PLPEVRRGVI EPSINLMQIL NVIDDHFLKA SESAQEVTKM LEANRMHYHS
301: NFADNGGHID HSARVMRVIT WNKSIRGMHN ADDKKDVFDA EEYETHATVL DKLLAWEKKL YDEVKAGELM KHEYQRKVAL LNKQKKRSAS TESLEKTKAA
401: VSHLHTRYIV DMQSMDSTVS EVNHIRDDQL YPKLVALVDG MAKMWNDMCM QHNSQLKMVT DLKSIDISQA PKETSKHHHE RTIQLWNEIQ GWHSQFEKLV
501: THEKQYIQAL NSWLKLNLIP IESSLKEKIS SPPRPQHPPI QALLHSWHDS LEKLPHELAK SAISSFAAVI KTIILHQEEE MKLKEKCEET QKEYSRKHQA
601: FQDWYQKYMQ RRTPPDETDP EKGDEANPKD PISEKQFVVE SLKKKLEEEV EAHQRHCVQV REKSLGSLKL RLPELFRALT DYTHACSDAY QRLKAITQSQ
701: SVNGVSS

Best Arabidopsis Sequence Match ( AT5G25590.1 )
(BLAST)

001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS

Arabidopsis Description

DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.