Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g007100.2.1 | Tomato | nucleus | 54.07 | 26.96 |
| PGSC0003DMT400005111 | Potato | nucleus | 54.07 | 26.79 |
| CDX71474 | Canola | nucleus | 50.39 | 26.7 |
| CDY04477 | Canola | nucleus | 49.61 | 26.29 |
| Bra012035.1-P | Field mustard | nucleus | 49.61 | 26.21 |
| AT2G27090.2 | Thale cress | nucleus | 50.13 | 25.71 |
| KRH73448 | Soybean | nucleus | 52.76 | 25.67 |
| KRH14687 | Soybean | nucleus | 52.49 | 25.54 |
| KRG89850 | Soybean | nucleus | 51.97 | 25.26 |
| KRH18693 | Soybean | nucleus | 53.02 | 25.09 |
| GSMUA_Achr6P32100_001 | Banana | cytosol | 39.37 | 24.92 |
| GSMUA_Achr9P05210_001 | Banana | nucleus | 39.9 | 23.53 |
| TraesCS2A01G099100.1 | Wheat | nucleus | 29.92 | 20.99 |
| VIT_07s0031g02650.t01 | Wine grape | cytosol | 19.42 | 20.96 |
| KXG39486 | Sorghum | nucleus | 41.21 | 18.92 |
| TraesCS4A01G128000.1 | Wheat | cytosol | 40.42 | 18.9 |
| TraesCS4B01G176800.1 | Wheat | cytosol | 39.9 | 18.7 |
| TraesCS4D01G178500.1 | Wheat | cytosol | 39.9 | 18.7 |
| VIT_00s1403g00010.t01 | Wine grape | nucleus | 35.96 | 18.56 |
| HORVU4Hr1G052040.1 | Barley | cytosol | 39.63 | 18.17 |
| Os03t0321500-01 | Rice | plasma membrane | 40.16 | 18.15 |
| Os07t0686500-01 | Rice | endoplasmic reticulum | 33.6 | 17.93 |
| Zm00001d028960_P001 | Maize | nucleus | 40.16 | 17.33 |
| VIT_03s0038g02660.t01 | Wine grape | nucleus | 25.2 | 14.75 |
| VIT_00s0434g00010.t01 | Wine grape | nucleus | 25.72 | 13.76 |
| VIT_09s0002g04590.t01 | Wine grape | nucleus | 21.78 | 13.56 |
| VIT_00s0264g00010.t01 | Wine grape | nucleus | 25.72 | 13.52 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 20.21 | 12.28 |
| VIT_11s0103g00310.t01 | Wine grape | nucleus | 23.62 | 11.73 |
| VIT_03s0038g03260.t01 | Wine grape | cytosol | 24.93 | 11.7 |
| VIT_10s0003g04480.t01 | Wine grape | nucleus | 19.95 | 11.66 |
| VIT_18s0001g02480.t01 | Wine grape | nucleus | 22.83 | 11.15 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 20.21 | 10.89 |
| VIT_18s0001g00170.t01 | Wine grape | cytosol | 20.21 | 10.38 |
| VIT_15s0021g01550.t01 | Wine grape | nucleus | 22.05 | 9.94 |
| VIT_06s0009g01600.t01 | Wine grape | nucleus | 7.61 | 6.16 |
Protein Annotations
| ArrayExpress:VIT_06s0009g01610 | EMBL:FN595504 | EnsemblPlants:VIT_06s0009g01610.t01 | EnsemblPlantsGene:VIT_06s0009g01610 | InterPro:DUF632 | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF6 | PFAM:PF04782 | ProteinID:CCB49151 | ProteinID:CCB49151.1 | SEG:seg | UniParc:UPI000210A3BF |
| UniProt:F6HA01 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:13547645..13572768
Molecular Weight (calculated)
44031.8 Da
IEP (calculated)
9.235
GRAVY (calculated)
-0.517
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCYGIHEDY WVTIAGLING LKVEIECEVS LRSSKSLEKA YHKAWETEKY FPSYPMRRAP FPPTFINFTL IPFISLLKAQ LASEMIRRDY DMKCKILRQL
101: ESKGESTNKI DKTRAVVKDL HSRIRVAIHR INSISKRIEE LRDTELEPQL EELISGLSRM WEGMFECHRL QYHIISVAYN NGTTKISIQS ESHRQFTIHL
201: GTVLSSLSSS FAKWIGAQKS YLQAINDWLV KCVPVEEKSS KKKRRRKSEH PLRDTGPPIY AACDVWLDML DKLPKKEVTD SIKGLAAETS FFLPRQEKSH
301: DKSKNKPHST DSHLNILRDD APPVDWVSGF ERFQSSLACF LEQLNNFAES SVKMYGHLEQ TIKDSRARYE RSMSQPNNTV V
101: ESKGESTNKI DKTRAVVKDL HSRIRVAIHR INSISKRIEE LRDTELEPQL EELISGLSRM WEGMFECHRL QYHIISVAYN NGTTKISIQS ESHRQFTIHL
201: GTVLSSLSSS FAKWIGAQKS YLQAINDWLV KCVPVEEKSS KKKRRRKSEH PLRDTGPPIY AACDVWLDML DKLPKKEVTD SIKGLAAETS FFLPRQEKSH
301: DKSKNKPHST DSHLNILRDD APPVDWVSGF ERFQSSLACF LEQLNNFAES SVKMYGHLEQ TIKDSRARYE RSMSQPNNTV V
001: MGASTSRIDE DKALQLCRER KKFVQQALDG RCLLAAAHVS YVQSLKSTGT ALRKFSETEV PVESSLYTST SATPEQPLAL IEKSVSHLSY SPPPASHSHH
101: DTYSPPPSPP STSPFQVNHM KFKGFSSKKV EEKPPVSIIA TVTSSSIPPS RSIEKMESTP FEESSSMPPE APWDYFGLSH PIDNQFSSSH VGNGHVSRSV
201: KEEDGTPEEE DDGEDFSFQE REESRDSDDD EFDEPTSDTL VRSFENFNRV RRDHSTLPQR EGVESDSSDA EKSKTPELSP PVTPLVATPV NKTPNKGDHT
301: ENKLPPRDFL SSMKEIELLF VKASETGKEV PRMLEANKLH FRPIVPSKES GSGASSLFKT CLSCGEDPKD VPEEPAQNSV KYLTWHRTES SRSSSSRNPL
401: GGMNSDDVEE LNSNLFENIC MIAGSHASTL DRLYAWERKL YDEVKGSQTV RREYDEKCRI LRELESEGKG SQRIDKTRAV VKDLHSRIRV AIHRIDSISR
501: RIEELRDNEL QPQLEELIEG LSRMWEVMLE CHKVQFQLIK ACYRGGNIKL NMQSELHRQV TSHLEDELCA LASSFTKWIT GQKSYIQAIN EWLVKCVALP
601: QRSKRKRRAP QPSLRNYGPP IYATCGIWLE KLEVLPTKEV SGSIKALASD VARFLPRQEK NRTKKHRSGE NKNDLTAHML QDETLEDCGP GFDRFRTSLE
701: GFVGQLNQFA ESSVKMYEEL KEGIHGAKNN YEQLKKAYSS QGK
101: DTYSPPPSPP STSPFQVNHM KFKGFSSKKV EEKPPVSIIA TVTSSSIPPS RSIEKMESTP FEESSSMPPE APWDYFGLSH PIDNQFSSSH VGNGHVSRSV
201: KEEDGTPEEE DDGEDFSFQE REESRDSDDD EFDEPTSDTL VRSFENFNRV RRDHSTLPQR EGVESDSSDA EKSKTPELSP PVTPLVATPV NKTPNKGDHT
301: ENKLPPRDFL SSMKEIELLF VKASETGKEV PRMLEANKLH FRPIVPSKES GSGASSLFKT CLSCGEDPKD VPEEPAQNSV KYLTWHRTES SRSSSSRNPL
401: GGMNSDDVEE LNSNLFENIC MIAGSHASTL DRLYAWERKL YDEVKGSQTV RREYDEKCRI LRELESEGKG SQRIDKTRAV VKDLHSRIRV AIHRIDSISR
501: RIEELRDNEL QPQLEELIEG LSRMWEVMLE CHKVQFQLIK ACYRGGNIKL NMQSELHRQV TSHLEDELCA LASSFTKWIT GQKSYIQAIN EWLVKCVALP
601: QRSKRKRRAP QPSLRNYGPP IYATCGIWLE KLEVLPTKEV SGSIKALASD VARFLPRQEK NRTKKHRSGE NKNDLTAHML QDETLEDCGP GFDRFRTSLE
701: GFVGQLNQFA ESSVKMYEEL KEGIHGAKNN YEQLKKAYSS QGK
Arabidopsis Description
At2g27090 [Source:UniProtKB/TrEMBL;Acc:Q9ZVD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.