Factsheet for VIT_18s0001g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51633	Soybean	cytosol	40.16	44.88
KRH60958	Soybean	cytosol	39.62	44.41
VIT_07s0031g02650.t01	Wine grape	cytosol	18.46	38.81
Os02t0669900-01	Rice	cytosol	22.24	38.64
VIT_03s0038g03260.t01	Wine grape	cytosol	41.91	38.3
GSMUA_Achr3P14690_001	Banana	nucleus	34.37	36.22
HORVU2Hr1G096140.2	Barley	cytosol	17.92	35.56
GSMUA_Achr1P18120_001	Banana	cytosol	32.48	35.44
CDY31475	Canola	nucleus	28.3	34.88
GSMUA_Achr7P04020_001	Banana	cytosol	32.88	34.86
GSMUA_Achr11P...	Banana	mitochondrion	31.27	34.52
AT1G20530.1	Thale cress	cytosol	28.03	33.88
OQU85656	Sorghum	cytosol	33.56	32.51
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	28.3	31.87
Os04t0562800-00	Rice	cytosol, mitochondrion	23.45	31.75
Zm00001d017553_P001	Maize	cytosol	32.08	31.61
HORVU7Hr1G057760.4	Barley	cytosol	27.22	30.84
Os08t0551200-00	Rice	cytosol	32.75	30.0
TraesCS6A01G253600.1	Wheat	nucleus	30.59	29.75
HORVU6Hr1G064670.13	Barley	nucleus	30.46	29.74
TraesCS6B01G271800.1	Wheat	nucleus	30.46	29.66
TraesCS6D01G235200.1	Wheat	nucleus	30.32	29.49
TraesCS7D01G273600.1	Wheat	cytosol	31.54	28.89
KXG26898	Sorghum	cytosol	30.59	28.63
TraesCS7B01G171500.1	Wheat	cytosol	30.73	28.57
Zm00001d006286_P001	Maize	nucleus	35.04	28.45
EER97130	Sorghum	nucleus	34.77	28.26
Zm00001d026130_P001	Maize	nucleus	29.78	28.01
Zm00001d002669_P002	Maize	cytosol	29.65	27.88
Os09t0547300-01	Rice	nucleus	34.37	27.75
Zm00001d021452_P001	Maize	nucleus	35.18	27.74
TraesCS2A01G405700.1	Wheat	cytosol	27.9	27.2
HORVU2Hr1G096180.1	Barley	cytosol	22.37	27.12
TraesCS2B01G423500.1	Wheat	cytosol	27.9	27.02
TraesCS2D01G402400.1	Wheat	cytosol	27.49	26.88
TraesCS5B01G348100.1	Wheat	nucleus	33.96	26.25
HORVU5Hr1G086500.2	Barley	nucleus	34.23	26.24
TraesCS5A01G347200.1	Wheat	nucleus	33.83	26.17
TraesCS5D01G353500.1	Wheat	nucleus	33.96	26.14
VIT_18s0001g02480.t01	Wine grape	nucleus	27.36	26.03
VIT_03s0038g02660.t01	Wine grape	nucleus	22.1	25.19
TraesCS7A01G273600.1	Wheat	cytosol, mitochondrion, nucleus	31.67	25.05
VIT_00s1403g00010.t01	Wine grape	nucleus	22.64	22.76
VIT_00s0434g00010.t01	Wine grape	nucleus	21.83	22.75
VIT_11s0103g00310.t01	Wine grape	nucleus	23.45	22.69
VIT_00s0264g00010.t01	Wine grape	nucleus	21.83	22.34
VIT_09s0002g04590.t01	Wine grape	nucleus	18.19	22.06
VIT_06s0009g01610.t01	Wine grape	nucleus	10.38	20.21
VIT_04s0023g03760.t01	Wine grape	mitochondrion	16.98	20.1
VIT_04s0008g04200.t01	Wine grape	cytosol	17.92	18.81
VIT_10s0003g04480.t01	Wine grape	nucleus	16.44	18.71
Bra025823.1-P	Field mustard	peroxisome	28.71	18.55
CDY29526	Canola	peroxisome	28.44	18.36
VIT_06s0009g01600.t01	Wine grape	nucleus	11.46	18.05
VIT_15s0021g01550.t01	Wine grape	nucleus	19.68	17.28

Protein Annotations

EntrezGene:100250689	wikigene:100250689	MapMan:35.1	EMBL:AM444260	ProteinID:CAN74079	ProteinID:CAN74079.1
ProteinID:CCB45387	ProteinID:CCB45387.1	ncoils:Coil	InterPro:DUF630	InterPro:DUF632	UniProt:F6H0B5
EMBL:FN595227	EntrezGene:LOC100250689	wikigene:LOC100250689	PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450
PANTHER:PTHR21450:SF19	UniParc:UPI00019856B2	ArrayExpress:VIT_18s0001g00170	EnsemblPlantsGene:VIT_18s0001g00170	EnsemblPlants:VIT_18s0001g00170.t01	unigene:Vvi.12513
unigene:Vvi.21168	RefSeq:XP_002284833	RefSeq:XP_002284833.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:1193267..1200055

Molecular Weight (calculated)

82209.7 Da

IEP (calculated)

4.890

GRAVY (calculated)

-0.513

Length

742 amino acids

Sequence
(BLAST)

001: MGCATSKLDD LPAVALCRDR CNFLEDAVQL RYDLADAHVA YMQSLTTIGV SLHRVFHHVA NHSDSKTKDD AVAAATACAG DSLGNRSGSD SSHLQFRSDS
101: EDDNDGSSES LKNNYVLEHE TLGSINYEKN HPAQSVAYYS FPDYGPNSYQ YFDSSTAYNG EMITGFFHAP SPSPLPASGG GYGSDSKPPP SPPRNSAWDF
201: LNLFDESYKL QPYSPMLGSE GVRDEGKQEV AKEERKFDDG AGNCSKVAEE EGQGRNIGQS GTSASREDAV VECAAHAMEK RENGDSDKEP VEERSDSATI
301: APTGTQGVMR SVSEAMREIQ VLFERASESG GGVSKMLEAG KLNYHPKSGV YQVSSKMLHV ITPSLLVVSS QPSTENIGSI YLDLNEDMGM SSGNLSSTLK
401: KLHMWEKKLY DEVKGEEKLR IMHERKCKQL KLFDEKGADA QKAETTQTLV QSISTKIRIA IDVVDKISIT INKLRDEELW PQINELIHGF SGMWKAMLEC
501: LKSQSQAVSE ANSLDAIICN GKLSDDYLEA LIELKLELQN WNLRFTNWID TQKGFVKGLN SWLLRCLLYE PEETPDGAEP ISPTSVGAPP VFVICNQWAE
601: AMERFSAEEV VEAIQAFFTT VNQLLELHSV DLQQRMIVDK DMERKVKNLE KKEQKMQKVM QAGEKKMTLE PGESGSLLPG VAVKHAQMIN VGSLQSGLRQ
701: IFEAMERFTA NLMQSYEELL VSIEDAKCAQ ERTHKHHGFL PK

Best Arabidopsis Sequence Match ( AT4G35240.1 )
(BLAST)

001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEEILGF ARLRLGQKAP FRMMI

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.