Factsheet for VIT_06s0009g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007100.2.1	Tomato	nucleus	63.06	38.87
PGSC0003DMT400005111	Potato	nucleus	63.27	38.75
KRH73448	Soybean	nucleus	63.27	38.06
KRH14687	Soybean	nucleus	62.84	37.8
KRH18693	Soybean	nucleus	64.54	37.76
KRG89850	Soybean	nucleus	62.42	37.5
AT2G27090.2	Thale cress	nucleus	57.32	36.34
CDY04477	Canola	nucleus	53.93	35.33
Bra012035.1-P	Field mustard	nucleus	53.5	34.95
CDX71474	Canola	nucleus	52.02	34.08
KXG39486	Sorghum	nucleus	47.56	26.99
TraesCS4B01G176800.1	Wheat	cytosol	46.5	26.94
TraesCS4D01G178500.1	Wheat	cytosol	46.5	26.94
TraesCS4A01G128000.1	Wheat	cytosol	46.5	26.87
GSMUA_Achr9P05210_001	Banana	nucleus	36.73	26.78
HORVU4Hr1G052040.1	Barley	cytosol	46.92	26.59
Os03t0321500-01	Rice	plasma membrane	47.35	26.45
GSMUA_Achr6P32100_001	Banana	cytosol	33.55	26.25
Zm00001d028960_P001	Maize	nucleus	45.65	24.35
Os07t0686500-01	Rice	endoplasmic reticulum	33.33	21.99
VIT_00s1403g00010.t01	Wine grape	nucleus	33.12	21.14
TraesCS2A01G099100.1	Wheat	nucleus	23.57	20.44
VIT_11s0103g00310.t01	Wine grape	nucleus	23.78	14.6
VIT_09s0002g04590.t01	Wine grape	nucleus	17.41	13.4
VIT_04s0008g04200.t01	Wine grape	cytosol	19.32	12.87
VIT_00s0434g00010.t01	Wine grape	nucleus	19.32	12.78
VIT_03s0038g02660.t01	Wine grape	nucleus	17.62	12.75
VIT_00s0264g00010.t01	Wine grape	nucleus	19.32	12.55
VIT_03s0038g03260.t01	Wine grape	cytosol	20.81	12.07
VIT_10s0003g04480.t01	Wine grape	nucleus	16.14	11.66
VIT_18s0001g00170.t01	Wine grape	cytosol	18.05	11.46
VIT_04s0023g03760.t01	Wine grape	mitochondrion	14.44	10.85
VIT_18s0001g02480.t01	Wine grape	nucleus	16.77	10.13
VIT_15s0021g01550.t01	Wine grape	nucleus	18.05	10.06
VIT_06s0009g01610.t01	Wine grape	nucleus	6.16	7.61
VIT_07s0031g02650.t01	Wine grape	cytosol	2.55	3.4

Protein Annotations

EntrezGene:100264970	wikigene:100264970	MapMan:35.2	UniProt:A5ASK1	EMBL:AM433927	ProteinID:CAN75994
ProteinID:CAN75994.1	ProteinID:CCB49152	ProteinID:CCB49152.1	InterPro:DUF630	InterPro:DUF632	EMBL:FN595504
EntrezGene:LOC100264970	wikigene:LOC100264970	PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450	PANTHER:PTHR21450:SF6
UniParc:UPI000151F7A8	ArrayExpress:VIT_06s0009g01600	EnsemblPlantsGene:VIT_06s0009g01600	EnsemblPlants:VIT_06s0009g01600.t01	RefSeq:XP_002273628	RefSeq:XP_002273628.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:13535764..13541303

Molecular Weight (calculated)

51899.0 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.602

Length

471 amino acids

Sequence
(BLAST)

001: MGITNSKIEE DKALQMCRER KKFVRQALDG RCALAAAHVD YIQSLEAIGI ALRRFVEPEA PNESSLYTST SATPEPLALT EKSLSQFSFS SPSLSQRVDA
101: TEALSPTPSP PYSSHIQLNH MKIRGSYSRK VEEKPSLPVM GTVTSSSTPQ NTTPRSTGRP EMTPFEASSL PPSTPPWDFF HLFPSVDNQF SSQGGELNQG
201: LDTADDITQL RKEEGIPELE DEEDKVSFHG EEESQDSEDE FDEPSTDTLV RSFENLNRVP DHVAASSSPT MPSTGSVASE TGYLNGEKSN SPGLSPLRST
301: SSAVALHSDV RSTPVKENGI ENKVAPKDFF SSIRDIEYLF VKASESGKEV PRMLEANKFH FRPIFPQKDS GSVTSTLFKA CFSCGEDPTI VQEEPAQAAM
401: KYLTWHRTAS SRSSSSRNPL GSNSKDDIED LTSNLFDNFC MTSGSHASTL DRLFAWERKL YDEVKVFSIT L

Best Arabidopsis Sequence Match ( AT2G27090.2 )
(BLAST)

001: MGASTSRIDE DKALQLCRER KKFVQQALDG RCLLAAAHVS YVQSLKSTGT ALRKFSETEV PVESSLYTST SATPEQPLAL IEKSVSHLSY SPPPASHSHH
101: DTYSPPPSPP STSPFQVNHM KFKGFSSKKV EEKPPVSIIA TVTSSSIPPS RSIEKMESTP FEESSSMPPE APWDYFGLSH PIDNQFSSSH VGNGHVSRSV
201: KEEDGTPEEE DDGEDFSFQE REESRDSDDD EFDEPTSDTL VRSFENFNRV RRDHSTLPQR EGVESDSSDA EKSKTPELSP PVTPLVATPV NKTPNKGDHT
301: ENKLPPRDFL SSMKEIELLF VKASETGKEV PRMLEANKLH FRPIVPSKES GSGASSLFKT CLSCGEDPKD VPEEPAQNSV KYLTWHRTES SRSSSSRNPL
401: GGMNSDDVEE LNSNLFENIC MIAGSHASTL DRLYAWERKL YDEVKGSQTV RREYDEKCRI LRELESEGKG SQRIDKTRAV VKDLHSRIRV AIHRIDSISR
501: RIEELRDNEL QPQLEELIEG LSRMWEVMLE CHKVQFQLIK ACYRGGNIKL NMQSELHRQV TSHLEDELCA LASSFTKWIT GQKSYIQAIN EWLVKCVALP
601: QRSKRKRRAP QPSLRNYGPP IYATCGIWLE KLEVLPTKEV SGSIKALASD VARFLPRQEK NRTKKHRSGE NKNDLTAHML QDETLEDCGP GFDRFRTSLE
701: GFVGQLNQFA ESSVKMYEEL KEGIHGAKNN YEQLKKAYSS QGK

Arabidopsis Description

At2g27090 [Source:UniProtKB/TrEMBL;Acc:Q9ZVD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.