Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04477 | Canola | nucleus | 93.32 | 93.32 |
| AT2G27090.2 | Thale cress | nucleus | 83.45 | 80.75 |
| VIT_06s0009g01600.t01 | Wine grape | nucleus | 34.08 | 52.02 |
| KRH18693 | Soybean | nucleus | 57.02 | 50.93 |
| KRG89850 | Soybean | nucleus | 55.49 | 50.89 |
| VIT_06s0009g01610.t01 | Wine grape | nucleus | 26.7 | 50.39 |
| Solyc09g007100.2.1 | Tomato | nucleus | 53.27 | 50.13 |
| KRH14687 | Soybean | nucleus | 54.38 | 49.94 |
| KRH73448 | Soybean | nucleus | 54.38 | 49.94 |
| PGSC0003DMT400005111 | Potato | nucleus | 52.85 | 49.41 |
| GSMUA_Achr6P32100_001 | Banana | cytosol | 36.16 | 43.19 |
| GSMUA_Achr9P05210_001 | Banana | nucleus | 38.53 | 42.88 |
| TraesCS4A01G128000.1 | Wheat | cytosol | 41.72 | 36.81 |
| TraesCS4D01G178500.1 | Wheat | cytosol | 41.59 | 36.78 |
| TraesCS4B01G176800.1 | Wheat | cytosol | 41.45 | 36.65 |
| CDX69386 | Canola | nucleus | 30.74 | 36.59 |
| CDY42005 | Canola | nucleus | 31.02 | 36.44 |
| TraesCS2A01G099100.1 | Wheat | nucleus | 27.4 | 36.28 |
| KXG39486 | Sorghum | nucleus | 41.72 | 36.14 |
| Os03t0321500-01 | Rice | plasma membrane | 42.14 | 35.94 |
| HORVU4Hr1G052040.1 | Barley | cytosol | 41.31 | 35.74 |
| Zm00001d028960_P001 | Maize | nucleus | 40.61 | 33.07 |
| Os07t0686500-01 | Rice | endoplasmic reticulum | 32.82 | 33.05 |
| CDY28162 | Canola | cytosol | 16.69 | 29.7 |
| CDY66508 | Canola | cytosol, nucleus | 17.25 | 29.31 |
| CDX68628 | Canola | nucleus | 22.67 | 24.11 |
| CDY31475 | Canola | nucleus | 18.64 | 22.26 |
| CDX82615 | Canola | nucleus | 23.23 | 22.15 |
| CDY28161 | Canola | nucleus | 6.26 | 21.95 |
| CDX87081 | Canola | nucleus | 16.27 | 21.91 |
| CDY39136 | Canola | nucleus | 22.81 | 21.78 |
| CDX76322 | Canola | cytosol | 21.0 | 21.36 |
| CDX77992 | Canola | nucleus | 18.64 | 21.3 |
| CDY17530 | Canola | cytosol | 20.72 | 20.99 |
| CDX73734 | Canola | nucleus | 18.5 | 20.78 |
| CDX69122 | Canola | nucleus | 21.28 | 20.37 |
| CDX83412 | Canola | nucleus | 18.92 | 20.21 |
| CDY07877 | Canola | cytosol | 19.75 | 19.86 |
| CDX71821 | Canola | nucleus | 19.47 | 19.72 |
| CDX88008 | Canola | nucleus | 19.47 | 19.58 |
| CDY41178 | Canola | nucleus | 19.61 | 19.56 |
| CDX88372 | Canola | nucleus | 22.25 | 19.37 |
| CDX75484 | Canola | cytosol, plastid | 18.78 | 19.37 |
| CDX95620 | Canola | nucleus | 18.36 | 18.99 |
| CDY56992 | Canola | nucleus | 19.05 | 18.84 |
| CDY42691 | Canola | nucleus | 18.78 | 18.67 |
| CDY41788 | Canola | nucleus | 21.7 | 18.31 |
| CDY04672 | Canola | nucleus | 21.84 | 18.0 |
| CDX84637 | Canola | cytosol | 16.69 | 17.88 |
| CDX88193 | Canola | nucleus | 18.22 | 17.77 |
| CDX80528 | Canola | nucleus | 18.08 | 17.74 |
| CDY08177 | Canola | nucleus | 21.98 | 17.73 |
| CDX79570 | Canola | cytosol | 16.69 | 17.42 |
| CDY52975 | Canola | nucleus | 17.94 | 17.27 |
| CDY61085 | Canola | nucleus | 17.66 | 17.02 |
| CDY42454 | Canola | cytosol | 15.58 | 15.98 |
| CDY18335 | Canola | cytosol | 15.58 | 15.84 |
| CDX87516 | Canola | nucleus | 8.76 | 14.0 |
| CDY29526 | Canola | peroxisome | 18.22 | 11.4 |
Protein Annotations
| EnsemblPlants:CDX71474 | EnsemblPlantsGene:GSBRNA2T00148345001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF6 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX71474 | ProteinID:CDX71474.1 | SEG:seg |
| UniParc:UPI0004EF301C | MapMan:35.1 | : | : | : | : |
Description
BnaC04g17090D
Coordinates
chrLK031793:+:1211290..1213944
Molecular Weight (calculated)
80870.7 Da
IEP (calculated)
5.890
GRAVY (calculated)
-0.739
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASTSRIDE DKALQLCRER KKFVQQALDG RCLLAAAHVS YVQSLRSTGT ALRRFAETEV PVESSLYTST SATPEQALAL TEKSVSHLSY SPPPSSPPPP
101: PSSRFSSKKV EEKPPVPVVA TVSVTSSSSV PRSRSMEKME SSTPFEESSS TPPPWDYFGL SHPIDNQFSS PPPPPPPRVG NGHVSSSVKG EDEETREVEE
201: EEEEDSENFS FQEREESNNG SDDDDEFDEP TSDTLVRSFE NFNRVRQREG AESEKSKTPE LSPPVTPLAA ATPLNKTPNH TENNRLPPPR DFLSSMKEVE
301: MLFVRASETG KEVPRMLEAN KLHFRPIVQS NQSGTGASSL FKTCLSCGED PKDVPEEEAA PNTMKYLTWH RTESSRSSSS LNPLGGMNSD DVEELNSNLF
401: ENIGIIAGSH ASTLDRLYAW ERKLYDEVKG SQAVRREYDD KCKILRELES EGKGSKIIDK TRSVVKDLHS RIRVAIHRID SISRRIEELR DNELQPQLEE
501: LIQGLSRMWE VMFECHKAQF QLISACHRRG NIKLNMQSEL HRQVTSHLES ELSALASSLT KWITGQRSYI KAIHEWLEKC VVLPRPSKRK RRAHQQPVLR
601: NLGPPIYATC AIWLEKLETL PAKEVSGSIK ALASDVARFL PRQEKNRSKK HGSDHMLRDE TLEDCGPGFD RFRTSLEVFA GQLNQFAESS VKMYEELEQG
701: IQEAKISYEQ WRVANGGFL
101: PSSRFSSKKV EEKPPVPVVA TVSVTSSSSV PRSRSMEKME SSTPFEESSS TPPPWDYFGL SHPIDNQFSS PPPPPPPRVG NGHVSSSVKG EDEETREVEE
201: EEEEDSENFS FQEREESNNG SDDDDEFDEP TSDTLVRSFE NFNRVRQREG AESEKSKTPE LSPPVTPLAA ATPLNKTPNH TENNRLPPPR DFLSSMKEVE
301: MLFVRASETG KEVPRMLEAN KLHFRPIVQS NQSGTGASSL FKTCLSCGED PKDVPEEEAA PNTMKYLTWH RTESSRSSSS LNPLGGMNSD DVEELNSNLF
401: ENIGIIAGSH ASTLDRLYAW ERKLYDEVKG SQAVRREYDD KCKILRELES EGKGSKIIDK TRSVVKDLHS RIRVAIHRID SISRRIEELR DNELQPQLEE
501: LIQGLSRMWE VMFECHKAQF QLISACHRRG NIKLNMQSEL HRQVTSHLES ELSALASSLT KWITGQRSYI KAIHEWLEKC VVLPRPSKRK RRAHQQPVLR
601: NLGPPIYATC AIWLEKLETL PAKEVSGSIK ALASDVARFL PRQEKNRSKK HGSDHMLRDE TLEDCGPGFD RFRTSLEVFA GQLNQFAESS VKMYEELEQG
701: IQEAKISYEQ WRVANGGFL
001: MGASTSRIDE DKALQLCRER KKFVQQALDG RCLLAAAHVS YVQSLKSTGT ALRKFSETEV PVESSLYTST SATPEQPLAL IEKSVSHLSY SPPPASHSHH
101: DTYSPPPSPP STSPFQVNHM KFKGFSSKKV EEKPPVSIIA TVTSSSIPPS RSIEKMESTP FEESSSMPPE APWDYFGLSH PIDNQFSSSH VGNGHVSRSV
201: KEEDGTPEEE DDGEDFSFQE REESRDSDDD EFDEPTSDTL VRSFENFNRV RRDHSTLPQR EGVESDSSDA EKSKTPELSP PVTPLVATPV NKTPNKGDHT
301: ENKLPPRDFL SSMKEIELLF VKASETGKEV PRMLEANKLH FRPIVPSKES GSGASSLFKT CLSCGEDPKD VPEEPAQNSV KYLTWHRTES SRSSSSRNPL
401: GGMNSDDVEE LNSNLFENIC MIAGSHASTL DRLYAWERKL YDEVKGSQTV RREYDEKCRI LRELESEGKG SQRIDKTRAV VKDLHSRIRV AIHRIDSISR
501: RIEELRDNEL QPQLEELIEG LSRMWEVMLE CHKVQFQLIK ACYRGGNIKL NMQSELHRQV TSHLEDELCA LASSFTKWIT GQKSYIQAIN EWLVKCVALP
601: QRSKRKRRAP QPSLRNYGPP IYATCGIWLE KLEVLPTKEV SGSIKALASD VARFLPRQEK NRTKKHRSGE NKNDLTAHML QDETLEDCGP GFDRFRTSLE
701: GFVGQLNQFA ESSVKMYEEL KEGIHGAKNN YEQLKKAYSS QGK
101: DTYSPPPSPP STSPFQVNHM KFKGFSSKKV EEKPPVSIIA TVTSSSIPPS RSIEKMESTP FEESSSMPPE APWDYFGLSH PIDNQFSSSH VGNGHVSRSV
201: KEEDGTPEEE DDGEDFSFQE REESRDSDDD EFDEPTSDTL VRSFENFNRV RRDHSTLPQR EGVESDSSDA EKSKTPELSP PVTPLVATPV NKTPNKGDHT
301: ENKLPPRDFL SSMKEIELLF VKASETGKEV PRMLEANKLH FRPIVPSKES GSGASSLFKT CLSCGEDPKD VPEEPAQNSV KYLTWHRTES SRSSSSRNPL
401: GGMNSDDVEE LNSNLFENIC MIAGSHASTL DRLYAWERKL YDEVKGSQTV RREYDEKCRI LRELESEGKG SQRIDKTRAV VKDLHSRIRV AIHRIDSISR
501: RIEELRDNEL QPQLEELIEG LSRMWEVMLE CHKVQFQLIK ACYRGGNIKL NMQSELHRQV TSHLEDELCA LASSFTKWIT GQKSYIQAIN EWLVKCVALP
601: QRSKRKRRAP QPSLRNYGPP IYATCGIWLE KLEVLPTKEV SGSIKALASD VARFLPRQEK NRTKKHRSGE NKNDLTAHML QDETLEDCGP GFDRFRTSLE
701: GFVGQLNQFA ESSVKMYEEL KEGIHGAKNN YEQLKKAYSS QGK
Arabidopsis Description
At2g27090 [Source:UniProtKB/TrEMBL;Acc:Q9ZVD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.