CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56992	Canola	nucleus	92.81	92.3
Bra014497.1-P	Field mustard	nucleus	94.05	89.24
CDY41178	Canola	nucleus	78.42	78.64
AT3G60320.1	Thale cress	nucleus	86.03	78.14
CDX83412	Canola	nucleus	72.48	77.86
CDX71821	Canola	nucleus	76.35	77.75
CDX95620	Canola	nucleus	73.03	75.97
KRH01066	Soybean	nucleus	65.42	64.88
KRH40173	Soybean	nucleus	66.25	62.37
VIT_15s0021g01550.t01	Wine grape	nucleus	67.63	57.87
KRH66512	Soybean	nucleus	62.24	56.32
PGSC0003DMT400066867	Potato	nucleus	65.15	55.28
GSMUA_Achr11P...	Banana	nucleus	54.77	54.77
Solyc01g090270.2.1	Tomato	nucleus	63.9	52.74
GSMUA_Achr8P10940_001	Banana	nucleus	52.97	52.04
Os10t0562700-01	Rice	nucleus	55.19	52.02
GSMUA_Achr4P21640_001	Banana	nucleus	50.21	51.86
Zm00001d029946_P003	Maize	nucleus	54.91	50.96
TraesCS1B01G231600.1	Wheat	nucleus	54.08	50.85
TraesCS1D01G219800.1	Wheat	nucleus	54.22	50.84
TraesCS1A01G218200.1	Wheat	nucleus	53.94	50.72
EER94480	Sorghum	nucleus	54.63	50.32
Zm00001d000039_P001	Maize	nucleus	54.08	50.06
Zm00001d017461_P001	Maize	cytosol, plastid	29.88	39.34
Zm00001d051338_P002	Maize	nucleus	28.63	37.77
KXG31098	Sorghum	cytosol, plastid	30.15	37.65
TraesCS6D01G225400.1	Wheat	cytosol, mitochondrion	28.77	37.01
TraesCS6A01G243100.1	Wheat	mitochondrion	28.91	36.93
Os02t0654600-00	Rice	nucleus	30.43	36.85
TraesCS6B01G281100.1	Wheat	mitochondrion, plastid	28.91	36.67
HORVU6Hr1G062350.2	Barley	plastid	28.63	36.25
CDX77992	Canola	nucleus	31.26	35.93
CDX73734	Canola	nucleus	31.26	35.31
CDX87081	Canola	nucleus	21.3	28.84
CDX79570	Canola	cytosol	25.86	27.14
CDX84637	Canola	cytosol	24.9	26.83
CDX88193	Canola	nucleus	23.65	23.2
CDX80528	Canola	nucleus	23.37	23.06
CDY28162	Canola	cytosol	12.72	22.77
CDY66508	Canola	cytosol, nucleus	12.72	21.75
CDY31475	Canola	nucleus	17.15	20.6
CDX69386	Canola	nucleus	17.01	20.36
CDY52975	Canola	nucleus	20.89	20.21
CDY61085	Canola	nucleus	20.75	20.11
CDY42005	Canola	nucleus	17.01	20.1
CDX68628	Canola	nucleus	18.26	19.53
CDX69122	Canola	nucleus	20.19	19.44
CDY17530	Canola	cytosol	18.95	19.3
CDX76322	Canola	cytosol	18.67	19.09
CDY04477	Canola	nucleus	18.95	19.05
CDY42454	Canola	cytosol	18.26	18.83
CDX71474	Canola	nucleus	18.67	18.78
CDY28161	Canola	nucleus	5.26	18.54
CDY18335	Canola	cytosol	18.12	18.53
CDX75484	Canola	cytosol, plastid	17.84	18.51
CDY07877	Canola	cytosol	18.12	18.32
CDX88008	Canola	nucleus	17.7	17.9
CDX82615	Canola	nucleus	18.4	17.64
CDY39136	Canola	nucleus	18.26	17.53
CDY41788	Canola	nucleus	20.19	17.14
CDX88372	Canola	nucleus	19.23	16.83
CDY04672	Canola	nucleus	19.23	15.94
CDY08177	Canola	nucleus	19.36	15.71
CDX87516	Canola	nucleus	7.19	11.56
CDY29526	Canola	peroxisome	18.12	11.4

Protein Annotations

EnsemblPlants:CDY42691	EnsemblPlantsGene:GSBRNA2T00075215001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF9	PFAM:PF04782	PFAM:PF04783	ProteinID:CDY42691	ProteinID:CDY42691.1	SEG:seg
UniParc:UPI0004EDB502	UniProt:A0A078HYC4	MapMan:35.1	:	:	:

Description

BnaC04g22150DBnaC04g22150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYC4]

Coordinates

chrLK032531:-:256000..258948

Molecular Weight (calculated)

81851.9 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.767

Length

723 amino acids

Sequence
(BLAST)

001: MGCAASKLDS EDTVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRVTGS ALSSFAGGEP LSVSDQTPQQ SPANRIPPRV PPSPAPLLKL KQAPPITSNR
101: RRKQQHKPKV PHILSDSSPS SSPMSQRSNF YQNSAYSATP SHASSVWNWE NFYPPSPPDS EFFDKKAQER RQKPDNNPFS HHTHDTETER SEYDFFDSSK
201: KNKNQEEVHC SEWDVHDHYS STSSSEEEED DHMESISEIG TNPTSRHHHQ DPSSPMPQER RYHDKAADDD ASYGGGGEME MVVRHRDLKE IADSLKENFH
301: KAAAAGDQVS QMLELGRAQL DRSFGQLKKT VIHSSSLLST LSSTWTSKPP LAVKYRLDTT ALDQPNSVKS LCSTLDRLLA WEKKLYEEIK AREGVKIEHE
401: KKLSQLQSQE YKGEDEAKLD KTKASITRLQ SLIIVTSQAV TTTSTAIIRL RDTDLVPQLV ELCHGFMYMW KAMHQYHETQ NGIVEQVRGL INRSSKGEST
501: SELHRQATRD LESAVSSWHS SFTHVIKFQR DFIHSVHAWF KLTLLPVCHE DAAVKEPTDA YAFCDEWKLA LDRVPDTVAS EAIKSFINVV HVISSKQADE
601: QKIKKRTESA SKELEKKASS LRNLERKYYQ SYSMVGVGIP DSGPEHMLDA RDPLSDKKSE LEVCRRRVEE EMVKHSKAIE VTRAMTLNNL QTGLPGVFQA
701: LTSFSALFME SLQTVCTRSY SIK

Best Arabidopsis Sequence Match ( AT3G60320.1 )
(BLAST)

001: MGCAASKLDN EDAVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSSFASGEP LSVSDQTPAV FLHTPPPPLS EQSPAKFVPP RFSPSPAPSS
101: VYPPSTSPSV ASSKQPSVMS TSSNRRRKQQ PKPRLPHILS ESSPSSSPRS ERSNFMPNLY PSAYQNSTYS ATPSHASSVW NWENFYPPSP PDSEFFNRKA
201: QEKKHNSDNR FNDEDTETVR SEYDFFDTRK QKQKQFESMR NQVEEETETE REEVQCSEWE DHDHYSTTSS SDAAEEEEED DDRESISEVG TRSEFGSTVR
301: SNSMRRHHQQ PSPMPQVYGG AEQSKYDKAD DATISSGSYR GGGDIADMKM VVRHRDLKEI IDAIKENFDK AAASGEQVSQ MLELGRAELD RSFSQLKKTV
401: IHSSSLLSNL SSTWTSKPPL AVKYRIDTTA LDQPNSSKSL CSTLDRLLAW EKKLYEEIKA REGFKIEHEK KLSQLQSQEY KGEDEAKLDK TKASITRLQS
501: LIIVTSQAVT TTSTAIIRLR DTDLVPQLVE LCHGFMYMWK SMHQYHETQN SIVEQVRGLI NRSGKGESTS ELHRQATRDL ESAVSSWHSS FSSLIKFQRD
601: FIHSVHAWFK LTLLPVCQED AANHHKEPLD AYAFCDEWKL ALDRIPDTVA SEAIKSFINV VHVISAKQAD EHKIKKRTES ASKELEKKAS SVRNLERKYY
701: QSYSMVGVGL PESGPDNQHM LDARDPLSDK KSELAVCQRR VEEEMVKYSK AIEVTRAMTL NNLQTGLPGV FQSLTSFSAL FMESLQTVCT RSYSIK

Arabidopsis Description

NRG2Nitrate regulatory gene2 protein [Source:UniProtKB/Swiss-Prot;Acc:Q93YU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.