CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95620	Canola	nucleus	94.95	91.94
Bra000365.1-P	Field mustard	nucleus	99.85	83.79
CDY42691	Canola	nucleus	77.86	72.48
CDY56992	Canola	nucleus	78.16	72.35
CDY41178	Canola	nucleus	75.19	70.18
CDX71821	Canola	nucleus	73.7	69.86
KRH01066	Soybean	nucleus	68.35	63.1
KRH40173	Soybean	nucleus	69.24	60.68
VIT_15s0021g01550.t01	Wine grape	nucleus	70.43	56.09
KRH66512	Soybean	nucleus	65.82	55.44
PGSC0003DMT400066867	Potato	nucleus	68.94	54.46
GSMUA_Achr11P...	Banana	nucleus	57.8	53.8
Solyc01g090270.2.1	Tomato	nucleus	67.76	52.05
GSMUA_Achr8P10940_001	Banana	nucleus	56.02	51.22
GSMUA_Achr4P21640_001	Banana	nucleus	53.19	51.14
Os10t0562700-01	Rice	nucleus	56.61	49.67
TraesCS1B01G231600.1	Wheat	nucleus	55.42	48.5
TraesCS1D01G219800.1	Wheat	nucleus	55.42	48.38
TraesCS1A01G218200.1	Wheat	nucleus	55.27	48.37
Zm00001d029946_P003	Maize	nucleus	55.72	48.14
EER94480	Sorghum	nucleus	55.27	47.39
Zm00001d000039_P001	Maize	nucleus	54.83	47.25
Zm00001d017461_P001	Maize	cytosol, plastid	30.61	37.52
HORVU6Hr1G062350.2	Barley	plastid	30.76	36.25
TraesCS6B01G281100.1	Wheat	mitochondrion, plastid	30.61	36.14
TraesCS6D01G225400.1	Wheat	cytosol, mitochondrion	30.16	36.12
TraesCS6A01G243100.1	Wheat	mitochondrion	30.31	36.04
Zm00001d051338_P002	Maize	nucleus	29.27	35.95
KXG31098	Sorghum	cytosol, plastid	30.76	35.75
Os02t0654600-00	Rice	nucleus	31.65	35.68
CDX77992	Canola	nucleus	32.99	35.29
CDX73734	Canola	nucleus	32.99	34.69
CDX87081	Canola	nucleus	22.88	28.84
CDX79570	Canola	cytosol	28.38	27.72
CDX84637	Canola	cytosol	27.64	27.72
CDX88193	Canola	nucleus	25.56	23.34
CDX80528	Canola	nucleus	25.11	23.06
CDY28162	Canola	cytosol	13.82	23.02
CDY31475	Canola	nucleus	18.87	21.1
CDX69386	Canola	nucleus	18.87	21.03
CDY66508	Canola	cytosol, nucleus	13.08	20.8
CDY61085	Canola	nucleus	23.03	20.78
CDY52975	Canola	nucleus	23.03	20.75
CDY42005	Canola	nucleus	18.72	20.59
CDY17530	Canola	cytosol	20.95	19.86
CDX69122	Canola	nucleus	21.99	19.71
CDX76322	Canola	cytosol	20.51	19.52
CDX68628	Canola	nucleus	19.47	19.38
CDX75484	Canola	cytosol, plastid	20.06	19.37
CDY04477	Canola	nucleus	20.36	19.05
CDX71474	Canola	nucleus	20.21	18.92
CDY42454	Canola	cytosol	19.32	18.54
CDY07877	Canola	cytosol	19.47	18.32
CDY18335	Canola	cytosol	19.17	18.25
CDY28161	Canola	nucleus	5.5	18.05
CDX88008	Canola	nucleus	19.02	17.9
CDX88372	Canola	nucleus	21.25	17.31
CDY41788	Canola	nucleus	21.69	17.14
CDX82615	Canola	nucleus	18.87	16.84
CDY39136	Canola	nucleus	18.72	16.73
CDY04672	Canola	nucleus	20.65	15.94
CDY08177	Canola	nucleus	20.8	15.71
CDX87516	Canola	nucleus	8.32	12.44
CDY29526	Canola	peroxisome	19.76	11.58

Protein Annotations

EnsemblPlants:CDX83412	EnsemblPlantsGene:GSBRNA2T00138985001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF9	PFAM:PF04782	PFAM:PF04783	ProteinID:CDX83412	ProteinID:CDX83412.1	SEG:seg
UniParc:UPI0004EE2E10	MapMan:35.1	:	:	:	:

Description

BnaA03g20940D

Coordinates

chrLK031832:+:1457771..1461333

Molecular Weight (calculated)

76291.2 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.699

Length

673 amino acids

Sequence
(BLAST)

001: MGCAASKLDN EDTVRRCKDR RRLMTESVRA RHQLAAAHAD YCRSLRLTGS ALSSFAAGEP LAVSDQTPAV FLHTPSERSS SNFIPPSPSV YTPPPPAPPS
101: QQPKLPHILS SPSSSERSNF MPTSFYPTAY QNSTYSATPS QASSVWNWEN FYPPSPPDSE FFNRKSQERQ HHNRDTETER SEHDFFDSRK EKEEEVQCSE
201: WEDHDHYSTT SSSEAAHEED EEEEEDIESI SEYGKGDDAA TSYSGRGDVS DMKMVVRHRD LKEIVDAIKE NFDKAAEAGE QVSQMLNIGK AQLDRSFSHL
301: KKTVIHSSSV LSNLSSTWTS KPPLEVKYRL DTTALEQPGG PKSLCSSLDR LLAWEKKLYE EVKAREGFKI EHEKKLSKLQ SQEYKGDNET KLDKTKGSIT
401: RLQSLIIVTS QAVSTTSTAI VRLRDTDLVP QLVELCHGFM YMWKAMHQFH EIQNNIVQQV QGLINRSGKG ESTSELHRQA TRDLETAVSL WHSSFCRLIK
501: FQREFIRSVQ AWFKLTLLPV CHDENPGHKE PVDAYAFCDE WKLTLDRVPD TVASEAIKSF INVVHVISAK QSEELKIKKR TESASKELEK KASSLRNIER
601: KYYQSYSTLE LGACQRRVEE EMLKHSKAIE VTRAMTLNNL QTGLPGVFQA LTSFSAMFTE SLQTVCTRSY SIK

Best Arabidopsis Sequence Match ( AT3G60320.1 )
(BLAST)

001: MGCAASKLDN EDAVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSSFASGEP LSVSDQTPAV FLHTPPPPLS EQSPAKFVPP RFSPSPAPSS
101: VYPPSTSPSV ASSKQPSVMS TSSNRRRKQQ PKPRLPHILS ESSPSSSPRS ERSNFMPNLY PSAYQNSTYS ATPSHASSVW NWENFYPPSP PDSEFFNRKA
201: QEKKHNSDNR FNDEDTETVR SEYDFFDTRK QKQKQFESMR NQVEEETETE REEVQCSEWE DHDHYSTTSS SDAAEEEEED DDRESISEVG TRSEFGSTVR
301: SNSMRRHHQQ PSPMPQVYGG AEQSKYDKAD DATISSGSYR GGGDIADMKM VVRHRDLKEI IDAIKENFDK AAASGEQVSQ MLELGRAELD RSFSQLKKTV
401: IHSSSLLSNL SSTWTSKPPL AVKYRIDTTA LDQPNSSKSL CSTLDRLLAW EKKLYEEIKA REGFKIEHEK KLSQLQSQEY KGEDEAKLDK TKASITRLQS
501: LIIVTSQAVT TTSTAIIRLR DTDLVPQLVE LCHGFMYMWK SMHQYHETQN SIVEQVRGLI NRSGKGESTS ELHRQATRDL ESAVSSWHSS FSSLIKFQRD
601: FIHSVHAWFK LTLLPVCQED AANHHKEPLD AYAFCDEWKL ALDRIPDTVA SEAIKSFINV VHVISAKQAD EHKIKKRTES ASKELEKKAS SVRNLERKYY
701: QSYSMVGVGL PESGPDNQHM LDARDPLSDK KSELAVCQRR VEEEMVKYSK AIEVTRAMTL NNLQTGLPGV FQSLTSFSAL FMESLQTVCT RSYSIK

Arabidopsis Description

NRG2Nitrate regulatory gene2 protein [Source:UniProtKB/Swiss-Prot;Acc:Q93YU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.