Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88193 | Canola | nucleus | 96.59 | 96.07 |
| CDX87081 | Canola | nucleus | 66.03 | 90.64 |
| AT5G25590.1 | Thale cress | nucleus | 85.95 | 81.29 |
| KRH62002 | Soybean | cytosol | 59.35 | 62.23 |
| KRH52653 | Soybean | cytosol | 58.66 | 60.48 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 56.34 | 58.42 |
| Solyc08g068100.2.1 | Tomato | cytosol | 53.89 | 54.48 |
| GSMUA_Achr11P... | Banana | cytosol | 48.43 | 53.79 |
| PGSC0003DMT400037619 | Potato | plastid | 47.07 | 53.41 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 42.84 | 52.07 |
| Zm00001d040901_P001 | Maize | mitochondrion | 17.46 | 50.39 |
| EES18173 | Sorghum | nucleus | 49.52 | 47.33 |
| Os05t0394200-01 | Rice | nucleus | 41.88 | 46.3 |
| CDY52975 | Canola | nucleus | 46.93 | 46.05 |
| CDY61085 | Canola | nucleus | 46.79 | 45.98 |
| GSMUA_Achr1P17130_001 | Banana | nucleus | 37.65 | 45.47 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 41.2 | 44.61 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 48.16 | 44.51 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 47.89 | 44.32 |
| Os01t0500500-01 | Rice | nucleus, plasma membrane | 45.29 | 41.66 |
| Zm00001d010488_P008 | Maize | cytosol | 43.93 | 40.91 |
| TraesCS3D01G202100.2 | Wheat | nucleus | 44.75 | 40.49 |
| TraesCS3A01G198900.1 | Wheat | nucleus | 44.61 | 40.32 |
| KXG32552 | Sorghum | nucleus | 42.7 | 39.72 |
| TraesCS3B01G231600.1 | Wheat | cytosol | 43.52 | 38.95 |
| HORVU3Hr1G042920.6 | Barley | cytosol, nucleus | 44.47 | 37.13 |
| CDX73734 | Canola | nucleus | 23.06 | 26.41 |
| CDX77992 | Canola | nucleus | 22.65 | 26.39 |
| CDX83412 | Canola | nucleus | 23.06 | 25.11 |
| CDY28162 | Canola | cytosol | 13.23 | 24.01 |
| CDX71821 | Canola | nucleus | 23.06 | 23.8 |
| CDY41178 | Canola | nucleus | 23.33 | 23.72 |
| CDY56992 | Canola | nucleus | 23.19 | 23.38 |
| CDY42691 | Canola | nucleus | 23.06 | 23.37 |
| CDX84637 | Canola | cytosol | 21.28 | 23.25 |
| CDX69386 | Canola | nucleus | 19.1 | 23.18 |
| CDX95620 | Canola | nucleus | 21.83 | 23.02 |
| CDY66508 | Canola | cytosol, nucleus | 13.23 | 22.93 |
| CDY42005 | Canola | nucleus | 18.96 | 22.71 |
| CDX79570 | Canola | cytosol | 21.28 | 22.64 |
| CDY31475 | Canola | nucleus | 16.92 | 20.6 |
| CDX68628 | Canola | nucleus | 18.42 | 19.97 |
| CDY17530 | Canola | cytosol | 18.83 | 19.44 |
| CDX76322 | Canola | cytosol | 18.55 | 19.24 |
| CDY28161 | Canola | nucleus | 5.32 | 19.02 |
| CDY39136 | Canola | nucleus | 19.37 | 18.86 |
| CDX82615 | Canola | nucleus | 19.24 | 18.7 |
| CDY04477 | Canola | nucleus | 17.87 | 18.22 |
| CDX71474 | Canola | nucleus | 17.74 | 18.08 |
| CDX88008 | Canola | nucleus | 17.46 | 17.9 |
| CDX69122 | Canola | nucleus | 18.28 | 17.84 |
| CDX75484 | Canola | cytosol, plastid | 16.92 | 17.79 |
| CDY07877 | Canola | cytosol | 17.05 | 17.48 |
| CDY04672 | Canola | nucleus | 20.33 | 17.09 |
| CDX88372 | Canola | nucleus | 19.24 | 17.07 |
| CDY08177 | Canola | nucleus | 20.6 | 16.95 |
| CDY41788 | Canola | nucleus | 18.96 | 16.31 |
| CDY42454 | Canola | cytosol | 14.05 | 14.69 |
| CDY18335 | Canola | cytosol | 13.92 | 14.43 |
| CDX87516 | Canola | nucleus | 7.64 | 12.44 |
| CDY29526 | Canola | peroxisome | 17.6 | 11.23 |
Protein Annotations
| EnsemblPlants:CDX80528 | EnsemblPlantsGene:GSBRNA2T00133633001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX80528 | ProteinID:CDX80528.1 | SEG:seg |
| UniParc:UPI0004EDEA1C | MapMan:35.1 | : | : | : | : |
Description
BnaC07g29160D
Coordinates
chrLK031821:-:1089108..1092044
Molecular Weight (calculated)
83688.3 Da
IEP (calculated)
5.254
GRAVY (calculated)
-0.858
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSKVDN EEAVARCKER RNVIKEAVTA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQTLDLLEQS RLEKQSERAA VVDPAPPPPP PIESLPPPPP
101: PLPKFSPSPI KRAVSLPAGM AGRGRKVKGG VDDMAIEEED EEEEDEEEEE EGVGKVEGEE ESSPRTPENV GKGRKRQETP EIVSASPASS LAWDYFFMEE
201: NVPGPDLEDR EVVGNGFESQ KNHNFRFNEE IEEEEEEEEK AGMFRKNSGH IGVEEMEPKT PEKVEEEEEE EKGRGKNKIE HANTAPPEFR RATTASNVNL
301: MKILDEIDDR FLKASECAQE VSKMLEATRL HYHSNFADNR GYVDHSARVM RVITWNKSLR GISNSEGGKE DQESDEHETH ATVLDKLLAW EKKLYDEVKQ
401: GELMKIEYQK KVALLNRYKK RGASAETVEK TKAAVSHLHT RYIVDMQSMD STVSEVNRLR DEQLYPRLVS LVEGMAKMWS NMCIQHDTQL IIVGELKSLE
501: ISTCQKETTK QHHQQTRQFC AVLEEWHVQF ERLVTHQKQY INSLNTWLKL NLISIESSLK ERVSSPPRPQ HPPIQALLHS WHDRLEKLPD EVAKSAISSF
601: AAVIRTILLH QEEEMKLKER CEETRREFIR KKQGFEEWYQ KHLEKRGPVE EEGGEDDHVT ERRIVVESLK KRLEDEEEAH QRHCVQVREK SLHSLKIRLP
701: EIFRALSDYA HACADSYEKL RIISQAQKAT SSS
101: PLPKFSPSPI KRAVSLPAGM AGRGRKVKGG VDDMAIEEED EEEEDEEEEE EGVGKVEGEE ESSPRTPENV GKGRKRQETP EIVSASPASS LAWDYFFMEE
201: NVPGPDLEDR EVVGNGFESQ KNHNFRFNEE IEEEEEEEEK AGMFRKNSGH IGVEEMEPKT PEKVEEEEEE EKGRGKNKIE HANTAPPEFR RATTASNVNL
301: MKILDEIDDR FLKASECAQE VSKMLEATRL HYHSNFADNR GYVDHSARVM RVITWNKSLR GISNSEGGKE DQESDEHETH ATVLDKLLAW EKKLYDEVKQ
401: GELMKIEYQK KVALLNRYKK RGASAETVEK TKAAVSHLHT RYIVDMQSMD STVSEVNRLR DEQLYPRLVS LVEGMAKMWS NMCIQHDTQL IIVGELKSLE
501: ISTCQKETTK QHHQQTRQFC AVLEEWHVQF ERLVTHQKQY INSLNTWLKL NLISIESSLK ERVSSPPRPQ HPPIQALLHS WHDRLEKLPD EVAKSAISSF
601: AAVIRTILLH QEEEMKLKER CEETRREFIR KKQGFEEWYQ KHLEKRGPVE EEGGEDDHVT ERRIVVESLK KRLEDEEEAH QRHCVQVREK SLHSLKIRLP
701: EIFRALSDYA HACADSYEKL RIISQAQKAT SSS
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.