Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18173 | Sorghum | nucleus | 82.5 | 71.32 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 84.46 | 70.62 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 84.01 | 70.33 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 67.12 | 65.73 |
| Zm00001d010488_P008 | Maize | cytosol | 75.87 | 63.91 |
| CDX87081 | Canola | nucleus | 40.12 | 49.81 |
| GSMUA_Achr11P... | Banana | cytosol | 47.96 | 48.18 |
| PGSC0003DMT400037619 | Potato | plastid | 46.15 | 47.37 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 49.17 | 46.11 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 41.18 | 45.27 |
| KRH62002 | Soybean | cytosol | 47.06 | 44.64 |
| KRH52653 | Soybean | cytosol | 46.91 | 43.74 |
| Solyc08g068100.2.1 | Tomato | cytosol | 47.21 | 43.17 |
| Bra009853.1-P | Field mustard | nucleus | 46.61 | 42.04 |
| CDX88193 | Canola | nucleus | 46.61 | 41.93 |
| CDX80528 | Canola | nucleus | 46.3 | 41.88 |
| AT5G25590.1 | Thale cress | nucleus | 47.81 | 40.9 |
| Os01t0500500-01 | Rice | nucleus, plasma membrane | 44.19 | 36.76 |
| Os07t0211900-01 | Rice | plasma membrane | 38.91 | 35.01 |
| Os09t0538700-01 | Rice | nucleus | 19.91 | 20.21 |
| Os09t0542500-00 | Rice | cytosol | 16.59 | 20.07 |
| Os02t0669900-01 | Rice | cytosol | 12.52 | 19.44 |
| Os10t0562700-01 | Rice | nucleus | 21.87 | 18.9 |
| Os02t0654600-00 | Rice | nucleus | 16.59 | 18.43 |
| Os01t0960200-00 | Rice | nucleus | 7.39 | 18.28 |
| Os02t0175200-00 | Rice | cytosol, mitochondrion | 8.14 | 17.14 |
| Os01t0585600-01 | Rice | nucleus | 17.19 | 16.64 |
| Os04t0562800-00 | Rice | cytosol, mitochondrion | 12.82 | 15.51 |
| Os05t0172300-01 | Rice | nucleus | 16.44 | 15.1 |
| Os09t0368900-00 | Rice | nucleus | 14.93 | 14.43 |
| Os03t0321500-01 | Rice | plasma membrane | 17.19 | 13.52 |
| Os08t0551200-00 | Rice | cytosol | 16.29 | 13.33 |
| Os09t0547300-01 | Rice | nucleus | 18.25 | 13.17 |
| Os05t0425000-00 | Rice | nucleus | 17.35 | 12.99 |
| Os07t0686500-01 | Rice | endoplasmic reticulum | 13.88 | 12.89 |
| Os05t0255800-01 | Rice | nucleus | 8.6 | 12.08 |
| Os02t0175301-00 | Rice | nucleus | 6.64 | 11.73 |
Protein Annotations
| EnsemblPlants:Os05t0394200-01 | EnsemblPlantsGene:Os05g0394200 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF7 |
| PFAM:PF04782 | ProteinID:BAS93873.1 | ProteinID:EEE63626.1 | SEG:seg | UniParc:UPI0001934077 | UniProt:B9FPG3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical conserved gene. (Os05t0394200-01)
Coordinates
chr5:+:19178379..19183276
Molecular Weight (calculated)
75518.3 Da
IEP (calculated)
6.241
GRAVY (calculated)
-0.802
Length
663 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSPAKI HRSKSMPLPP QTKGPAVLHS DSIREDDEEE AEIEEEEDED EHLDDRRRRL RHRPQVPPLV SSPAPGTPVT PQPPPPPPPP PPDSKPGVDT
101: WDYFFSMDEG MASIAPDDDE IIQEPEDEKY VPASPPRPPL SPPTPVAAPA PQEEFEEEPR TPEMVTPPPS LPPRPPAVSS KKKKGKGKHR AAHHQHTESA
201: PPVTLVGGGG GKAGKVVPVE LPRIDLLRVL AEIDDRFLKA SESAGEVSKV LEANRMHYHS NFVDTRGHID HSARVMKIIT WNRSFRAMQN GDDGKDDFEN
301: DEWETLATVI DKILAWEKKL YDEVKAGELM KLEYQRKVAL LNRQKKHNAA TEVLEKTKAA VTHLHTRYIV DMQSMDSTVS EIQHLRDNQL YPRLLDLADR
401: MAKMWEDMHL HHENQLKTVL NLKSVDISDS HIETSDHHHS HTRQLRDIVE KWTTNFSDLM SYQKEYINAL YSWLKLNLIP IESSLKEKVA SPPRVQQPPV
501: KALLQAWNEH LTKLPDDLAK TAIVSFRAVL DTILSVQDEE LKQKETCEHT RKEYMRKARA FEDWYHKHAQ RRAFDVDPES GEGTSQKDTV AEKRFAVESL
601: KNKLDDEVEA HNKLSKQVRE KSLSILKAHL PELFRALTDF SLASFEMYSK MRLMSLMQDQ GNN
101: WDYFFSMDEG MASIAPDDDE IIQEPEDEKY VPASPPRPPL SPPTPVAAPA PQEEFEEEPR TPEMVTPPPS LPPRPPAVSS KKKKGKGKHR AAHHQHTESA
201: PPVTLVGGGG GKAGKVVPVE LPRIDLLRVL AEIDDRFLKA SESAGEVSKV LEANRMHYHS NFVDTRGHID HSARVMKIIT WNRSFRAMQN GDDGKDDFEN
301: DEWETLATVI DKILAWEKKL YDEVKAGELM KLEYQRKVAL LNRQKKHNAA TEVLEKTKAA VTHLHTRYIV DMQSMDSTVS EIQHLRDNQL YPRLLDLADR
401: MAKMWEDMHL HHENQLKTVL NLKSVDISDS HIETSDHHHS HTRQLRDIVE KWTTNFSDLM SYQKEYINAL YSWLKLNLIP IESSLKEKVA SPPRVQQPPV
501: KALLQAWNEH LTKLPDDLAK TAIVSFRAVL DTILSVQDEE LKQKETCEHT RKEYMRKARA FEDWYHKHAQ RRAFDVDPES GEGTSQKDTV AEKRFAVESL
601: KNKLDDEVEA HNKLSKQVRE KSLSILKAHL PELFRALTDF SLASFEMYSK MRLMSLMQDQ GNN
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.