Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009853.1-P | Field mustard | nucleus | 98.64 | 98.91 |
| CDX80528 | Canola | nucleus | 96.07 | 96.59 |
| CDX87081 | Canola | nucleus | 66.08 | 91.2 |
| AT5G25590.1 | Thale cress | nucleus | 85.62 | 81.42 |
| KRH62002 | Soybean | cytosol | 59.43 | 62.66 |
| KRH52653 | Soybean | cytosol | 58.89 | 61.04 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 56.17 | 58.56 |
| Solyc08g068100.2.1 | Tomato | cytosol | 53.87 | 54.76 |
| GSMUA_Achr11P... | Banana | cytosol | 48.3 | 53.94 |
| PGSC0003DMT400037619 | Potato | plastid | 46.95 | 53.56 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 42.47 | 51.91 |
| Zm00001d040901_P001 | Maize | mitochondrion | 17.5 | 50.79 |
| EES18173 | Sorghum | nucleus | 49.25 | 47.33 |
| Os05t0394200-01 | Rice | nucleus | 41.93 | 46.61 |
| GSMUA_Achr1P17130_001 | Banana | nucleus | 37.86 | 45.96 |
| CDY52975 | Canola | nucleus | 45.73 | 45.11 |
| CDY61085 | Canola | nucleus | 45.59 | 45.04 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 40.98 | 44.61 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 47.9 | 44.51 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 47.63 | 44.32 |
| Os01t0500500-01 | Rice | nucleus, plasma membrane | 44.78 | 41.41 |
| Zm00001d010488_P008 | Maize | cytosol | 43.83 | 41.04 |
| TraesCS3D01G202100.2 | Wheat | nucleus | 44.1 | 40.12 |
| TraesCS3A01G198900.1 | Wheat | nucleus | 43.96 | 39.95 |
| KXG32552 | Sorghum | nucleus | 42.61 | 39.85 |
| TraesCS3B01G231600.1 | Wheat | cytosol | 42.88 | 38.58 |
| HORVU3Hr1G042920.6 | Barley | cytosol, nucleus | 43.96 | 36.9 |
| CDX73734 | Canola | nucleus | 22.93 | 26.41 |
| CDX77992 | Canola | nucleus | 22.52 | 26.39 |
| CDX83412 | Canola | nucleus | 23.34 | 25.56 |
| CDY28162 | Canola | cytosol | 13.16 | 24.01 |
| CDX71821 | Canola | nucleus | 22.93 | 23.8 |
| CDY41178 | Canola | nucleus | 23.2 | 23.72 |
| CDY56992 | Canola | nucleus | 23.34 | 23.66 |
| CDY42691 | Canola | nucleus | 23.2 | 23.65 |
| CDX95620 | Canola | nucleus | 22.12 | 23.45 |
| CDY66508 | Canola | cytosol, nucleus | 13.43 | 23.4 |
| CDX84637 | Canola | cytosol | 21.17 | 23.25 |
| CDX69386 | Canola | nucleus | 18.72 | 22.85 |
| CDX79570 | Canola | cytosol | 21.17 | 22.64 |
| CDY42005 | Canola | nucleus | 18.59 | 22.39 |
| CDY31475 | Canola | nucleus | 16.69 | 20.43 |
| CDX68628 | Canola | nucleus | 18.45 | 20.12 |
| CDY17530 | Canola | cytosol | 18.59 | 19.3 |
| CDY39136 | Canola | nucleus | 19.54 | 19.12 |
| CDX76322 | Canola | cytosol | 18.32 | 19.09 |
| CDY28161 | Canola | nucleus | 5.29 | 19.02 |
| CDX82615 | Canola | nucleus | 19.4 | 18.97 |
| CDY04477 | Canola | nucleus | 17.91 | 18.36 |
| CDX71474 | Canola | nucleus | 17.77 | 18.22 |
| CDX88008 | Canola | nucleus | 17.37 | 17.9 |
| CDX75484 | Canola | cytosol, plastid | 16.69 | 17.65 |
| CDX69122 | Canola | nucleus | 17.91 | 17.58 |
| CDY07877 | Canola | cytosol | 16.96 | 17.48 |
| CDY04672 | Canola | nucleus | 20.22 | 17.09 |
| CDX88372 | Canola | nucleus | 19.13 | 17.07 |
| CDY08177 | Canola | nucleus | 20.49 | 16.95 |
| CDY41788 | Canola | nucleus | 18.86 | 16.31 |
| CDY42454 | Canola | cytosol | 14.25 | 14.98 |
| CDY18335 | Canola | cytosol | 14.11 | 14.71 |
| CDX87516 | Canola | nucleus | 7.6 | 12.44 |
| CDY29526 | Canola | peroxisome | 17.23 | 11.05 |
Protein Annotations
| EnsemblPlants:CDX88193 | EnsemblPlantsGene:GSBRNA2T00147655001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX88193 | ProteinID:CDX88193.1 | SEG:seg |
| UniParc:UPI0004EE4027 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g27840D
Coordinates
chrLK031854:-:1248774..1251842
Molecular Weight (calculated)
84277.7 Da
IEP (calculated)
5.102
GRAVY (calculated)
-0.900
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSKVDN EESVARCKER RNVIKEAVTA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQTLDLLEQS RFEKQSERAA VVDPAPPPPP PIESLPPPPP
101: PLPKFSPSPI KRAVSLPTGV AGRGRKVKGG VDDMAIEEED EEEEEEEEEE GVGKVEEEEE SSPRTPENVG KGRKRQETPE VVSASPASNL AWDYFFMVEN
201: VPGPDLEDRE VGNGFESQKN HNFRFNEEIE EEEEEEKEEE EKAGMFRKNS GHIGVEEMEP KTPEKVEEEE EEEEEKGRAK NKIEHANTAP PEFRRATTAS
301: DVNLMKILDG IDDRFLKASE CAQEVSKMLE ATRLHYHSNF ADNRGYVDHS ARVMRVITWN KSLRGISNGE GGKEDQESDE HETHATVLDK LLAWEKKLYD
401: EVKQGELMKI EYQKKVSLLN RYKKRGASAE TVEKTKAAVS HLHTRYIVDM QSMDSTVSEV NRLRDDQLYP RLVSLVEGMA KMWSNMCIQH DTQLNIVGEL
501: KSLEISTSQK ETTKQHHQQT RQFCTVLEEW HVQFEKLVTH QKQYINSLNT WLKLNLIPIE SSLKERVSSP PRPQHPPIQA LLHSWHDRLE KLPDEVAKSA
601: ISSFAAVIRT ILLHQEEEMK LKERCEDTRR EFIRKKQGFE EWYQKHLEKR GPVEEEGGED DHVTERRIVV ESLKKRLEDE EEAHQRHCVQ VREKSLNSLK
701: IRLPEIFRAL SDYAHACADS YEKLRIISQA QKPTLSS
101: PLPKFSPSPI KRAVSLPTGV AGRGRKVKGG VDDMAIEEED EEEEEEEEEE GVGKVEEEEE SSPRTPENVG KGRKRQETPE VVSASPASNL AWDYFFMVEN
201: VPGPDLEDRE VGNGFESQKN HNFRFNEEIE EEEEEEKEEE EKAGMFRKNS GHIGVEEMEP KTPEKVEEEE EEEEEKGRAK NKIEHANTAP PEFRRATTAS
301: DVNLMKILDG IDDRFLKASE CAQEVSKMLE ATRLHYHSNF ADNRGYVDHS ARVMRVITWN KSLRGISNGE GGKEDQESDE HETHATVLDK LLAWEKKLYD
401: EVKQGELMKI EYQKKVSLLN RYKKRGASAE TVEKTKAAVS HLHTRYIVDM QSMDSTVSEV NRLRDDQLYP RLVSLVEGMA KMWSNMCIQH DTQLNIVGEL
501: KSLEISTSQK ETTKQHHQQT RQFCTVLEEW HVQFEKLVTH QKQYINSLNT WLKLNLIPIE SSLKERVSSP PRPQHPPIQA LLHSWHDRLE KLPDEVAKSA
601: ISSFAAVIRT ILLHQEEEMK LKERCEDTRR EFIRKKQGFE EWYQKHLEKR GPVEEEGGED DHVTERRIVV ESLKKRLEDE EEAHQRHCVQ VREKSLNSLK
701: IRLPEIFRAL SDYAHACADS YEKLRIISQA QKPTLSS
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.