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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88193 Canola nucleus 98.91 98.64
AT5G25590.1 Thale cress nucleus 85.03 80.65
KRH62002 Soybean cytosol 60.0 63.09
KRH52653 Soybean cytosol 59.46 61.46
VIT_04s0008g04200.t01 Wine grape cytosol 56.46 58.7
Solyc08g068100.2.1 Tomato cytosol 54.29 55.03
GSMUA_Achr11P... Banana cytosol 48.84 54.39
PGSC0003DMT400037619 Potato plastid 47.35 53.87
GSMUA_Achr3P24800_001 Banana nucleus 42.72 52.07
Zm00001d040901_P001 Maize mitochondrion 17.28 50.0
EES18173 Sorghum nucleus 48.98 46.94
Os05t0394200-01 Rice nucleus 42.04 46.61
Bra018963.1-P Field mustard nucleus 46.8 45.87
GSMUA_Achr1P17130_001 Banana nucleus 37.82 45.8
TraesCS1D01G246700.1 Wheat nucleus 41.36 44.9
TraesCS1A01G247500.1 Wheat nucleus 48.16 44.64
TraesCS1B01G258100.1 Wheat nucleus 47.89 44.44
Os01t0500500-01 Rice nucleus, plasma membrane 44.76 41.28
Zm00001d010488_P008 Maize cytosol 43.81 40.91
TraesCS3D01G202100.2 Wheat nucleus 43.95 39.88
KXG32552 Sorghum nucleus 42.59 39.72
TraesCS3A01G198900.1 Wheat nucleus 43.81 39.7
TraesCS3B01G231600.1 Wheat cytosol 42.72 38.34
HORVU3Hr1G042920.6 Barley cytosol, nucleus 43.67 36.56
Bra036821.1-P Field mustard nucleus 23.13 26.56
Bra007523.1-P Field mustard nucleus 23.4 23.79
Bra022983.1-P Field mustard cytosol 21.77 23.22
Bra000365.1-P Field mustard nucleus 24.35 22.32
Bra014497.1-P Field mustard nucleus 22.99 22.18
Bra011166.1-P Field mustard nucleus 18.5 20.51
Bra011832.1-P Field mustard nucleus 19.05 20.38
Bra020807.1-P Field mustard nucleus 19.32 18.61
Bra012035.1-P Field mustard nucleus 17.96 18.31
Bra009665.1-P Field mustard cytosol 17.55 18.25
Bra038839.1-P Field mustard nucleus 19.32 18.07
Bra038563.1-P Field mustard nucleus 19.73 17.88
Bra015667.1-P Field mustard nucleus 19.32 17.01
Bra011597.1-P Field mustard nucleus 19.32 16.99
Bra017947.1-P Field mustard nucleus 20.82 16.68
Bra002985.1-P Field mustard nucleus 14.56 14.78
Bra025823.1-P Field mustard peroxisome 17.69 11.32
Protein Annotations
EnsemblPlants:Bra009853.1EnsemblPlants:Bra009853.1-PEnsemblPlantsGene:Bra009853InterPro:DUF630InterPro:DUF632ncoils:Coil
PANTHER:PTHR21450PANTHER:PTHR21450:SF7PFAM:PF04782PFAM:PF04783SEG:segUniParc:UPI000253F34F
UniProt:M4D055MapMan:35.1::::
Description
AT5G25590 (E=3e-233) | INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52320.4); Has 31848 Blast hits to 18905 proteins in 762 species: Archae - 79; Bacteria - 761; Metazoa - 15943; Fungi - 3494; Plants - 1748; Viruses - 431; Other Eukaryotes - 9392 (source: NCBI BLink).
Coordinates
chrA06:-:17675525..17678330
Molecular Weight (calculated)
83914.4 Da
IEP (calculated)
5.212
GRAVY (calculated)
-0.879
Length
735 amino acids
Sequence
(BLAST)
001: MGCAQSKVDN EESVARCKER RNVIKEAVTA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQTLDLLEQS RFEKQSERAA VVDPAPPPPP PIESLPPPPP
101: PLPKFSPSPI KRAVSLPTGV AGRGRKVKGG VVDDMAIEEE DEEEEEEEGA GKVEEEEESS PRTPENVGKG RKRPETPEVV SASPASNLAW DYFFMVENVP
201: GPDLEDREVG NGFESQKNHN FRFNEEIEEE EEEEKEEEEK AGMFRKNSGH IGVEEMEPKT PEKVEEEEEE EEEKGRAKNK IEHANTAPPE FRRATTASDV
301: NLMKILDGID DRFLKASECA QEVSKMLEAT RLHYHSNFAD NRGYVDHSAR VMRVITWNKS LRGISNGEGG KEDQDSDEHE THATVLDKLL AWEKKLYDEV
401: KQGELMKIEY QKKVALLNRY KKRGASAETV EKTKAAVSHL HTRYIVDMQS MDSTVSEVNR LRDEQLYPRL VSLVEGMAKM WSNMCIQHDT QLNIVGELKS
501: LEISTSQKET TKQHHQQTRQ FCTVLEEWHV QFERLVTHQK QYINSLNTWL KLNLIPIESS LKERVSSPPR PQHPPIQALL HSWHDRLEKL PDEVAKSAIS
601: SFAAVIRTIL LHQEEEMKLK ERCEDTRKEF IRKKQGFEEW YQKHLEKRGP VEEEGGEDDH VTERRIVVES LKKRLEDEEE AHQRHCVQVR EKSLNSLKIR
701: LPEIFRALSD YAHACADSYE KLRIISQAQK PTLSS
Best Arabidopsis Sequence Match ( AT5G25590.1 )
(BLAST)
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.