Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 68.66 | 62.73 |
| CDX87081 | Canola | nucleus | 47.6 | 53.75 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 53.57 | 45.69 |
| KRH62002 | Soybean | cytosol | 52.9 | 45.64 |
| KRH52653 | Soybean | cytosol | 52.9 | 44.87 |
| GSMUA_Achr1P17130_001 | Banana | nucleus | 43.28 | 43.0 |
| CDX80528 | Canola | nucleus | 52.07 | 42.84 |
| Bra009853.1-P | Field mustard | nucleus | 52.07 | 42.72 |
| CDX88193 | Canola | nucleus | 51.91 | 42.47 |
| Solyc08g068100.2.1 | Tomato | cytosol | 50.25 | 41.79 |
| Os05t0394200-01 | Rice | nucleus | 45.27 | 41.18 |
| AT5G25590.1 | Thale cress | nucleus | 52.9 | 41.16 |
| EES18173 | Sorghum | nucleus | 51.91 | 40.81 |
| PGSC0003DMT400037619 | Potato | plastid | 43.12 | 40.25 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 44.78 | 39.88 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 52.24 | 39.77 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 52.07 | 39.6 |
| Zm00001d010488_P008 | Maize | cytosol | 45.61 | 34.94 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 22.89 | 26.19 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 20.56 | 24.46 |
| GSMUA_Achr1P07380_001 | Banana | cytosol, nucleus, peroxisome | 20.73 | 22.81 |
| GSMUA_Achr4P21640_001 | Banana | nucleus | 24.71 | 21.29 |
| GSMUA_Achr11P... | Banana | nucleus | 25.37 | 21.16 |
| GSMUA_Achr8P34030_001 | Banana | cytosol | 20.73 | 20.97 |
| GSMUA_Achr8P10940_001 | Banana | nucleus | 24.88 | 20.38 |
| GSMUA_Achr9P30410_001 | Banana | cytosol | 20.56 | 20.16 |
| GSMUA_Achr7P16020_001 | Banana | nucleus | 20.73 | 20.0 |
| GSMUA_Achr6P32100_001 | Banana | cytosol | 19.73 | 19.77 |
| GSMUA_Achr2P22150_001 | Banana | cytosol | 19.24 | 19.66 |
| GSMUA_Achr5P00570_001 | Banana | cytosol | 21.72 | 19.61 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.9 | 18.75 |
| GSMUA_Achr9P05210_001 | Banana | nucleus | 19.9 | 18.58 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, nucleus | 20.23 | 18.51 |
| GSMUA_Achr1P18120_001 | Banana | cytosol | 20.4 | 18.09 |
| GSMUA_Achr3P14690_001 | Banana | nucleus | 21.06 | 18.04 |
| GSMUA_Achr7P04020_001 | Banana | cytosol | 20.73 | 17.86 |
| GSMUA_Achr3P00490_001 | Banana | nucleus | 18.08 | 17.52 |
| GSMUA_Achr7P04930_001 | Banana | nucleus | 16.92 | 17.2 |
| GSMUA_Achr11P... | Banana | cytosol | 18.91 | 17.12 |
| GSMUA_Achr3P22040_001 | Banana | cytosol | 19.24 | 16.91 |
| GSMUA_Achr9P08510_001 | Banana | nucleus | 21.72 | 16.75 |
| GSMUA_Achr3P19020_001 | Banana | cytosol | 19.73 | 14.42 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P24800_001 | EnsemblPlants:GSMUA_Achr3T24800_001 | EnsemblPlantsGene:GSMUA_Achr3G24800_001 | InterPro:DUF630 | InterPro:DUF632 | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | UniParc:UPI000296377C | UniProt:M0SHJ6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Cell surface glycoprotein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G24800_001]
Coordinates
chr3:-:25205421..25210190
Molecular Weight (calculated)
67726.3 Da
IEP (calculated)
7.619
GRAVY (calculated)
-0.674
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRVNN DEAVTRCKER RQWMKAAVVA RNAFAAAHSA YAASLKDTGA ALSEFGQFPS KIHKAAPILE EDNEGDDEAE EENDGGLNRR RRPSEAAGGS
101: PSLSPSPASP PPPSLQPTSQ PEAWGLTDEN VPVPSLTQAG GIRPEREESP EKKTVPAAPP SSIDLMKVLT DLDDLFLRAS ESTHEVSKVL EATRMHYHSN
201: FVDSRGHVDH SVRVMRVITW HRSFEVTPGA DGSKGDFIDD EWETHATVLD KILAWEKRLY DEVKAGRLTK IEYHRKVALL NRQKKGGASG ESLQRTKAAV
301: SHLHTKYVVD MQSMDSTVAE IQRLRDKRLY PKLVELVEGM AKMWQAMHMH HYSQLKMMEG IKALDISNAS KETSEHHHKR TLQLLDTVRE WQSQLHKLVT
401: HQKQYVGALD SWLKLNLIPI DGSLKEKVSS PQRPAHAPIQ TLVHAWHEYL EKQLPEELAN TALLSFSAVL NTIEAVQQEE LKQKERCGEI QKAYLRKKRA
501: FEDWCQKHSQ KRMGEPETGG EAASQNDPVG ERRRVVESLK SKLDEGVEAH KGICKQVREK SSVTLKTHLP ELFRAVSDFA ELCSKMYTSL KLVTDQNPLT
601: KAT
101: PSLSPSPASP PPPSLQPTSQ PEAWGLTDEN VPVPSLTQAG GIRPEREESP EKKTVPAAPP SSIDLMKVLT DLDDLFLRAS ESTHEVSKVL EATRMHYHSN
201: FVDSRGHVDH SVRVMRVITW HRSFEVTPGA DGSKGDFIDD EWETHATVLD KILAWEKRLY DEVKAGRLTK IEYHRKVALL NRQKKGGASG ESLQRTKAAV
301: SHLHTKYVVD MQSMDSTVAE IQRLRDKRLY PKLVELVEGM AKMWQAMHMH HYSQLKMMEG IKALDISNAS KETSEHHHKR TLQLLDTVRE WQSQLHKLVT
401: HQKQYVGALD SWLKLNLIPI DGSLKEKVSS PQRPAHAPIQ TLVHAWHEYL EKQLPEELAN TALLSFSAVL NTIEAVQQEE LKQKERCGEI QKAYLRKKRA
501: FEDWCQKHSQ KRMGEPETGG EAASQNDPVG ERRRVVESLK SKLDEGVEAH KGICKQVREK SSVTLKTHLP ELFRAVSDFA ELCSKMYTSL KLVTDQNPLT
601: KAT
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.