Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P04930_001 | Banana | nucleus | 60.29 | 63.24 |
| GSMUA_Achr7P16020_001 | Banana | nucleus | 47.27 | 47.04 |
| CDY28162 | Canola | cytosol | 28.78 | 44.31 |
| CDY66508 | Canola | cytosol, nucleus | 29.1 | 42.79 |
| Zm00001d046842_P001 | Maize | nucleus | 27.17 | 41.63 |
| Zm00001d046839_P001 | Maize | nucleus | 27.17 | 41.63 |
| Zm00001d012496_P001 | Maize | nucleus | 24.44 | 40.53 |
| VIT_11s0103g00310.t01 | Wine grape | nucleus | 49.36 | 40.03 |
| Bra011166.1-P | Field mustard | nucleus | 42.6 | 39.97 |
| KRH19063 | Soybean | nucleus | 47.59 | 39.52 |
| Solyc07g047830.2.1 | Tomato | nucleus | 48.39 | 39.45 |
| PGSC0003DMT400015690 | Potato | nucleus | 48.23 | 39.27 |
| KRH02818 | Soybean | nucleus | 46.78 | 39.06 |
| CDX68628 | Canola | nucleus | 41.96 | 38.61 |
| KRH12287 | Soybean | nucleus | 47.43 | 38.16 |
| AT4G30130.3 | Thale cress | nucleus | 44.21 | 37.93 |
| KRH37304 | Soybean | nucleus | 46.3 | 37.65 |
| CDY28161 | Canola | nucleus | 12.38 | 37.56 |
| CDX82615 | Canola | nucleus | 44.21 | 36.47 |
| CDY39136 | Canola | nucleus | 43.73 | 36.12 |
| OQU80872 | Sorghum | nucleus | 46.14 | 36.06 |
| Zm00001d031530_P006 | Maize | nucleus | 45.18 | 35.66 |
| Zm00001d049762_P007 | Maize | nucleus | 45.66 | 35.63 |
| Bra038839.1-P | Field mustard | nucleus | 44.05 | 34.86 |
| AT2G19090.1 | Thale cress | nucleus | 45.18 | 34.52 |
| Zm00001d013369_P001 | Maize | nucleus | 33.44 | 34.27 |
| Bra038563.1-P | Field mustard | nucleus | 44.37 | 34.03 |
| TraesCS7B01G137800.1 | Wheat | nucleus | 45.66 | 32.76 |
| TraesCS7A01G252800.1 | Wheat | nucleus | 43.09 | 31.31 |
| TraesCS7D01G251500.1 | Wheat | cytosol | 45.5 | 31.27 |
| HORVU7Hr1G052210.21 | Barley | cytosol | 40.03 | 29.61 |
| GSMUA_Achr1P07380_001 | Banana | cytosol, nucleus, peroxisome | 22.67 | 25.73 |
| GSMUA_Achr8P34030_001 | Banana | cytosol | 23.95 | 25.0 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, nucleus | 25.72 | 24.28 |
| GSMUA_Achr2P22150_001 | Banana | cytosol | 22.67 | 23.9 |
| GSMUA_Achr11P... | Banana | mitochondrion | 25.72 | 23.81 |
| GSMUA_Achr3P22040_001 | Banana | cytosol | 25.56 | 23.18 |
| GSMUA_Achr3P14690_001 | Banana | nucleus | 25.88 | 22.87 |
| GSMUA_Achr7P04020_001 | Banana | cytosol | 25.72 | 22.86 |
| GSMUA_Achr1P18120_001 | Banana | cytosol | 24.92 | 22.79 |
| GSMUA_Achr6P32100_001 | Banana | cytosol | 22.03 | 22.76 |
| GSMUA_Achr9P05210_001 | Banana | nucleus | 22.67 | 21.83 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 18.49 | 21.82 |
| GSMUA_Achr11P... | Banana | cytosol | 22.67 | 21.17 |
| GSMUA_Achr9P08510_001 | Banana | nucleus | 24.28 | 19.31 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 15.59 | 19.13 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 17.52 | 18.08 |
| GSMUA_Achr1P17130_001 | Banana | nucleus | 17.52 | 17.96 |
| GSMUA_Achr9P30410_001 | Banana | cytosol | 17.68 | 17.89 |
| GSMUA_Achr3P19020_001 | Banana | cytosol | 23.15 | 17.45 |
| GSMUA_Achr11P... | Banana | nucleus | 19.94 | 17.15 |
| GSMUA_Achr5P00570_001 | Banana | cytosol | 18.17 | 16.92 |
| GSMUA_Achr4P21640_001 | Banana | nucleus | 18.65 | 16.57 |
| GSMUA_Achr8P10940_001 | Banana | nucleus | 19.29 | 16.3 |
| GSMUA_Achr11P... | Banana | cytosol | 17.04 | 16.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P00490_001 | EnsemblPlants:GSMUA_Achr3T00490_001 | EnsemblPlantsGene:GSMUA_Achr3G00490_001 | InterPro:DUF630 | InterPro:DUF632 | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF3 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | UniParc:UPI000295E7CE | UniProt:M0SAL7 |
| MapMan:35.1 | : | : | : | : | : |
Description
pumilio domain-containing protein PPD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G00490_001]
Coordinates
chr3:-:383102..387089
Molecular Weight (calculated)
69433.6 Da
IEP (calculated)
5.006
GRAVY (calculated)
-0.497
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSTSKLED EDAVRLCRDR KNFIKQAIEH RNQFGYGHIA YIESLLRVSQ ALRDYAADDE HHFFLTACRS IPSQPARRLS PEITPETVRT EYYYPTGHYG
101: VEGYTPAEAP TTDSSFFSSS YARPKYPPAS PQASQSDIFW NPFSSLNTDL YAYGNSSEDV LLDEDADRLR KVRQEEGIPD LEEEEEDDDD DEGIQNVQMK
201: EEGSRIHPKP TAKLIASEQT ADVSRKNDKV NEIKERPTSM GEVMENVEAQ FVILCDFANE LSLILEASRV QPSSSPLECK NIMMLNPAAL LRSASSSRSS
301: SSRFLQVSSG RTNDAYESSN NDIEESCTVS RSHKSTLERL YAWEKKLYEE IKCGERARID YEKKCMQLRI HDINGEEPFV VDKTRVAIRD LQTRLRVSIS
401: SVEYISKRIE ALRDQELHPQ VMELIQGLAR MWRTMAECHR CQKRTVDEAK LLLFSPSTAA VPVGVPLPRA SRVAAALEVE LRNWTSRLAA WVQAQRCYAR
501: ALAGWIRRCA PPTLDATAPT PSRSGGGPAP PVYTACVRWS RLMDSVSEAA AIEGLEMFVA GVASMVAGHK REEEEVEDPR RAAELGPKVV CAGLAVSVGA
601: LADLAANSAE GYEELVRTLP SG
101: VEGYTPAEAP TTDSSFFSSS YARPKYPPAS PQASQSDIFW NPFSSLNTDL YAYGNSSEDV LLDEDADRLR KVRQEEGIPD LEEEEEDDDD DEGIQNVQMK
201: EEGSRIHPKP TAKLIASEQT ADVSRKNDKV NEIKERPTSM GEVMENVEAQ FVILCDFANE LSLILEASRV QPSSSPLECK NIMMLNPAAL LRSASSSRSS
301: SSRFLQVSSG RTNDAYESSN NDIEESCTVS RSHKSTLERL YAWEKKLYEE IKCGERARID YEKKCMQLRI HDINGEEPFV VDKTRVAIRD LQTRLRVSIS
401: SVEYISKRIE ALRDQELHPQ VMELIQGLAR MWRTMAECHR CQKRTVDEAK LLLFSPSTAA VPVGVPLPRA SRVAAALEVE LRNWTSRLAA WVQAQRCYAR
501: ALAGWIRRCA PPTLDATAPT PSRSGGGPAP PVYTACVRWS RLMDSVSEAA AIEGLEMFVA GVASMVAGHK REEEEVEDPR RAAELGPKVV CAGLAVSVGA
601: LADLAANSAE GYEELVRTLP SG
001: MGCSHSKFDD DEAVQICKDR KRFIKQAVEH RTGFASGHIA YIQSLRKVSD ALREYIEGDE PHEFMLDTCV TPVKRMSSSG GFIEISPPSK MVQSEAESKL
101: NVNSYLMASG SRPVRVEEKP PRSPETFQVE TYGADSFFGM NMNMNSPGLG SHNIPPPSPQ NSQWDFFWNP FSALDQYGYS YDNQNGMDDD MRRLRRVREE
201: EGIPDLEEDE YVKFEDHHNM KATEDFNGGK MYQEDKVEHV NEEFTDSGCK IENESDKNCN GTQERRSLEV SRGGTTGHVV GVTSDDGKGE TPGFTVYLNR
301: RPTSMAEVIK DLEDQFAIIC TAGKEVSGLL EASRVQYTSS NELSAMTMLN PVALFRSGGS SRSSSSSRFL ISSSGGSRAS EFESSSEFSE ESCMLSGSHQ
401: STLDRLYAWE KKLYDEVKSG DRIRIAYEKK CLVLRNQDVK GADSSAVDKT RATIRDLHTQ IKVSIHSIES ISERIETLRD QELLPQLLEL VQGLAQMWKV
501: MAECHQIQKR TLDEAKLLLA TTPSNRHKKQ QQTSLPEINS QRLARSALHL VVQLRNWRAC FQAWITSQRS YILSLTGWLL RCFRCDPDPE KVTLTSCPHP
601: IYEVCIQWSR LLNGLNEKPV LDKLDFFASG MGAIYARQLK EDTSPVTDSS RKYSRPESME LVEAEKVEEE KIMTAEKLAE IAVKVLCHGM SVAVSSLAEF
701: SISSADEHSK LVTHREEDMP EQTKI
101: NVNSYLMASG SRPVRVEEKP PRSPETFQVE TYGADSFFGM NMNMNSPGLG SHNIPPPSPQ NSQWDFFWNP FSALDQYGYS YDNQNGMDDD MRRLRRVREE
201: EGIPDLEEDE YVKFEDHHNM KATEDFNGGK MYQEDKVEHV NEEFTDSGCK IENESDKNCN GTQERRSLEV SRGGTTGHVV GVTSDDGKGE TPGFTVYLNR
301: RPTSMAEVIK DLEDQFAIIC TAGKEVSGLL EASRVQYTSS NELSAMTMLN PVALFRSGGS SRSSSSSRFL ISSSGGSRAS EFESSSEFSE ESCMLSGSHQ
401: STLDRLYAWE KKLYDEVKSG DRIRIAYEKK CLVLRNQDVK GADSSAVDKT RATIRDLHTQ IKVSIHSIES ISERIETLRD QELLPQLLEL VQGLAQMWKV
501: MAECHQIQKR TLDEAKLLLA TTPSNRHKKQ QQTSLPEINS QRLARSALHL VVQLRNWRAC FQAWITSQRS YILSLTGWLL RCFRCDPDPE KVTLTSCPHP
601: IYEVCIQWSR LLNGLNEKPV LDKLDFFASG MGAIYARQLK EDTSPVTDSS RKYSRPESME LVEAEKVEEE KIMTAEKLAE IAVKVLCHGM SVAVSSLAEF
701: SISSADEHSK LVTHREEDMP EQTKI
Arabidopsis Description
DUF630 family protein (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q9SZW6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.