CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031530_P006	Maize	nucleus	91.96	92.89
Zm00001d049762_P007	Maize	nucleus	90.83	90.72
Zm00001d013369_P001	Maize	nucleus	68.84	90.28
Zm00001d046842_P001	Maize	nucleus	45.98	90.15
Zm00001d046839_P001	Maize	nucleus	45.85	89.9
Zm00001d012496_P001	Maize	nucleus	41.71	88.53
TraesCS7B01G137800.1	Wheat	nucleus	76.0	69.78
TraesCS7D01G251500.1	Wheat	cytosol	76.38	67.18
TraesCS7A01G252800.1	Wheat	nucleus	68.97	64.14
HORVU7Hr1G052210.21	Barley	cytosol	66.46	62.9
GSMUA_Achr3P00490_001	Banana	nucleus	36.06	46.14
CDY28161	Canola	nucleus	11.43	44.39
GSMUA_Achr7P04930_001	Banana	nucleus	33.04	44.35
KRH19063	Soybean	nucleus	41.71	44.33
PGSC0003DMT400015690	Potato	nucleus	41.96	43.72
VIT_11s0103g00310.t01	Wine grape	nucleus	41.96	43.55
KRH02818	Soybean	nucleus	40.7	43.49
Solyc07g047830.2.1	Tomato	nucleus	41.58	43.38
KRH12287	Soybean	nucleus	41.83	43.08
CDY66508	Canola	cytosol, nucleus	22.61	42.55
CDY28162	Canola	cytosol	21.48	42.33
Bra011166.1-P	Field mustard	nucleus	35.05	42.08
KRH37304	Soybean	nucleus	40.08	41.7
CDX68628	Canola	nucleus	34.92	41.12
AT4G30130.3	Thale cress	nucleus	36.18	39.72
CDY39136	Canola	nucleus	36.68	38.78
CDX82615	Canola	nucleus	36.43	38.46
Bra038839.1-P	Field mustard	nucleus	37.56	38.04
Bra038563.1-P	Field mustard	nucleus	38.32	37.61
AT2G19090.1	Thale cress	nucleus	38.19	37.35
EES06355	Sorghum	cytosol	27.89	36.22
EER97113	Sorghum	cytosol	22.61	24.86
EES08807	Sorghum	nucleus	20.85	23.09
OQU85656	Sorghum	cytosol	19.85	20.63
KXG39486	Sorghum	nucleus	20.98	20.12
KXG26898	Sorghum	cytosol	19.85	19.92
KXG31098	Sorghum	cytosol, plastid	14.45	19.86
KXG36086	Sorghum	nucleus	16.08	19.51
EES19545	Sorghum	nucleus	21.86	19.29
EER97130	Sorghum	nucleus	21.48	18.73
OQU88702	Sorghum	cytosol	10.18	18.37
EER94480	Sorghum	nucleus	17.96	18.22
EES18173	Sorghum	nucleus	16.58	17.21
KXG32552	Sorghum	nucleus	16.71	16.88
EES00973	Sorghum	nucleus	14.7	16.67
KXG34164	Sorghum	plastid	19.22	16.49

Protein Annotations

EnsemblPlants:OQU80872	EnsemblPlantsGene:SORBI_3007G202000	EntrezGene:8063996	InterPro:DUF630	InterPro:DUF632	PANTHER:PTHR21450
PANTHER:PTHR21450:SF3	PFAM:PF04782	PFAM:PF04783	ProteinID:EES14237.1	ProteinID:OQU80872	ProteinID:OQU80872.1
RefSeq:XP_002444742.1	SEG:seg	UniParc:UPI0001A87E27	UniProt:C5YIA1	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr7:+:63296735..63302531

Molecular Weight (calculated)

89322.2 Da

IEP (calculated)

5.023

GRAVY (calculated)

-0.661

Length

796 amino acids

Sequence
(BLAST)

001: MGCAASRLED EEAVKMCRDR RDFIKQALEQ RNRFASSHIA YIESLKRVSM ALQRFVAGDD HHELIFDTFI SPVKQQKPEM LGLPYGSYEK RTIHVSRYLR
101: SGPNPSVSVE EHPRPVETVR VESHYPMEND SGMDRFLPTH SPVRSSSYYP PPYNRPSYPP ASAQEPVRIS SSYYMPYDRP SYAPPSPQEA PRTSYYGSYD
201: RPSYPSPSHQ EPQRNSYHVP YDRPSYPPPS PQEQESSPWD FIWNPFSSLD SFAYPRPRSS YDNMVTDDEL ARLQRVREEE GIPELEEEDD ECQEHIQMHG
301: KEEKEEHANA DDDEDEDDDE DDDDEECEHS DECIVSNEGT CSVNFDANMK QETKGFESKG IQCTEAPEPR KTVELEIKAH KKELMRNRVA NAEETPGFTV
401: YLNRRPASLV EAMKDIDCQF SGICDAAREI SVMLEASRAQ YSTSNDLSVK MLNPVALLRS ASSRSSSSRF LLAPSSSIDD LYDNETSSCY SEESCSTMSG
501: SHHSTLDRLY TWEKKLYKEV KAGERLRIDY EKRLTHLRNQ DVKGEEPSSV DKTCATLKSL HTRLKVSIHT VQSISKRIEI LRDEELHPQL MELIQGLSRM
601: WRAMAERHKA QKRTIEDAKL LFLQHHPSAA TAISLGPLEA ATPPPAALAL ESEIQAWRGA LETWLFAQRA YARALAAWAR RCLGISSAAR PSHPLPPAFL
701: VCLEWGRAVD AATEARVIDG LDFFVAGVGS VCSGAATGME GMAGRVLCAG MAAVTGAMAE FAAASADSYD AAITAVITAA RAPERGKENG IGQLER

Best Arabidopsis Sequence Match ( AT4G30130.3 )
(BLAST)

001: MGCSHSKFDD DEAVQICKDR KRFIKQAVEH RTGFASGHIA YIQSLRKVSD ALREYIEGDE PHEFMLDTCV TPVKRMSSSG GFIEISPPSK MVQSEAESKL
101: NVNSYLMASG SRPVRVEEKP PRSPETFQVE TYGADSFFGM NMNMNSPGLG SHNIPPPSPQ NSQWDFFWNP FSALDQYGYS YDNQNGMDDD MRRLRRVREE
201: EGIPDLEEDE YVKFEDHHNM KATEDFNGGK MYQEDKVEHV NEEFTDSGCK IENESDKNCN GTQERRSLEV SRGGTTGHVV GVTSDDGKGE TPGFTVYLNR
301: RPTSMAEVIK DLEDQFAIIC TAGKEVSGLL EASRVQYTSS NELSAMTMLN PVALFRSGGS SRSSSSSRFL ISSSGGSRAS EFESSSEFSE ESCMLSGSHQ
401: STLDRLYAWE KKLYDEVKSG DRIRIAYEKK CLVLRNQDVK GADSSAVDKT RATIRDLHTQ IKVSIHSIES ISERIETLRD QELLPQLLEL VQGLAQMWKV
501: MAECHQIQKR TLDEAKLLLA TTPSNRHKKQ QQTSLPEINS QRLARSALHL VVQLRNWRAC FQAWITSQRS YILSLTGWLL RCFRCDPDPE KVTLTSCPHP
601: IYEVCIQWSR LLNGLNEKPV LDKLDFFASG MGAIYARQLK EDTSPVTDSS RKYSRPESME LVEAEKVEEE KIMTAEKLAE IAVKVLCHGM SVAVSSLAEF
701: SISSADEHSK LVTHREEDMP EQTKI

Arabidopsis Description

DUF630 family protein (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q9SZW6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.