CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011231_P001	Maize	nucleus	88.03	91.02
Zm00001d044312_P001	Maize	nucleus	90.88	91.01
Os01t0585600-01	Rice	nucleus	73.22	75.04
TraesCS3B01G240800.1	Wheat	nucleus	71.37	71.67
TraesCS3D01G213000.1	Wheat	nucleus	70.94	71.24
TraesCS3A01G210200.1	Wheat	nucleus	70.51	71.02
HORVU3Hr1G050880.1	Barley	nucleus	70.37	70.98
GSMUA_Achr9P30410_001	Banana	cytosol	44.87	51.22
GSMUA_Achr5P00570_001	Banana	cytosol	46.15	48.5
VIT_10s0003g04480.t01	Wine grape	nucleus	41.17	44.33
CDX84637	Canola	cytosol	33.9	35.47
KRH12768	Soybean	cytosol	31.2	34.87
Bra022983.1-P	Field mustard	cytosol	34.19	34.83
AT2G34670.2	Thale cress	nucleus	34.05	34.44
CDX79570	Canola	cytosol	33.76	34.4
KXG36086	Sorghum	nucleus	31.77	33.99
KRH37731	Soybean	nucleus	30.2	32.92
EER94480	Sorghum	nucleus	29.06	25.99
OQU88702	Sorghum	cytosol	14.81	23.58
KXG31098	Sorghum	cytosol, plastid	18.23	22.11
KXG32552	Sorghum	nucleus	22.22	19.8
EES18173	Sorghum	nucleus	21.51	19.69
EER97113	Sorghum	cytosol	19.94	19.34
EES08807	Sorghum	nucleus	18.66	18.22
EES06355	Sorghum	cytosol	15.1	17.29
OQU85656	Sorghum	cytosol	18.09	16.58
EES19545	Sorghum	nucleus	20.8	16.19
EER97130	Sorghum	nucleus	20.94	16.1
KXG26898	Sorghum	cytosol	17.52	15.51
KXG39486	Sorghum	nucleus	18.23	15.42
OQU80872	Sorghum	nucleus	16.67	14.7
KXG34164	Sorghum	plastid	17.95	13.58

Protein Annotations

EnsemblPlants:EES00973	EnsemblPlantsGene:SORBI_3003G200100	EntrezGene:8078227	InterPro:AH/BAR_dom_sf	InterPro:DUF630	InterPro:DUF632
InterPro:IPR027267	ncoils:Coil	PANTHER:PTHR21450	PANTHER:PTHR21450:SF21	PFAM:PF04782	PFAM:PF04783
ProteinID:EES00973	ProteinID:EES00973.1	RefSeq:XP_002455853.1	SEG:seg	SUPFAM:SSF103657	unigene:Sbi.1199
UniParc:UPI0001A84906	UniProt:C5XPF2	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:52775039..52783525

Molecular Weight (calculated)

78054.1 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.557

Length

702 amino acids

Sequence
(BLAST)

001: MGCSNSKVDN EEPVRRSKDR KQLMKQLVRR RPELAAAHIA YLHALRNTGA TLRQFVELES ALSQQPPEGL AAPPSPAPQP PPRPPPPEPS VTSSLPPSPR
101: PPPPLPFSPI TTIRKMEKRD DELPPPPLVL SPIRLRKRDD ELHGGDFTDD DDDTDSCSTP LPPPLPPGID WEELDPYNVR PLSFPSPFAD RNDKEVASQV
201: TMDNDPEVDT EFDGEEDASV LGIDDGIVDR VHVNPAKGRA LGDVNSSMVS RVTKDSDSMA VPWRSKKSLV EIVKEIDEYF LKAAASGKDV VILLDSAGGR
301: PDALEIEAKK GAGKNSKSAK VFSTLSWSWS FKSQQANSES SVLNSSDSSG YGYHGKTLEK LYDEEQKLYK LIKDEEFARL QYKKHVSVLQ KLESGEHDRL
401: HAERVRDAIE ELQTRIISLE EAVSLACFSI SNLRDEELYP QIIELSAGLV HMWRNMYECH QVQNHIAQQV SLLGNIPGSE PTSDTHCQAT SQLEIEVSGW
501: HNAFCNLITL QREYISILNQ WIGLTDCLPD DGGLMRSSSG IRSLSEELQR ALDRLPEKIA AEAIMTFMSI IHSIVVQQSQ ERQLKKKSDN MDSKFQTQLE
601: KHSENAMQNS AQPPNKNHYS VSKNETKLDA FRKQVEEEKA RYLTSVRVSR AMTLNNLQTS LPNVFHALVG FSGMCVQAFE GISRCSEVAV IHSGAASPAI
701: CS

Best Arabidopsis Sequence Match ( AT3G51290.3 )
(BLAST)

001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP

Arabidopsis Description

Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.