CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022626_P001	Maize	nucleus	93.14	94.0
Os09t0538700-01	Rice	nucleus	88.11	88.51
TraesCS5D01G336000.1	Wheat	nucleus	82.16	81.05
TraesCS5B01G330400.1	Wheat	nucleus	82.47	80.75
HORVU5Hr1G084030.15	Barley	nucleus	82.32	79.65
GSMUA_Achr3P00690_001	Banana	nucleus	53.2	68.84
GSMUA_Achr1P26500_001	Banana	cytosol	53.05	66.03
KRH76635	Soybean	cytosol	56.1	58.88
VIT_04s0023g03760.t01	Wine grape	mitochondrion	56.25	58.85
PGSC0003DMT400009224	Potato	nucleus	35.37	58.73
Solyc02g083610.2.1	Tomato	nucleus	55.03	56.67
KRH28816	Soybean	cytosol	2.74	54.55
KRH28815	Soybean	cytosol	37.5	54.42
CDX73734	Canola	nucleus	53.05	54.38
CDX77992	Canola	nucleus	52.13	54.37
Bra036821.1-P	Field mustard	nucleus	52.74	54.06
KRH08031	Soybean	cytosol	30.34	45.54
AT3G51290.2	Thale cress	cytosol	53.51	43.98
EES00973	Sorghum	nucleus	33.99	31.77
EER94480	Sorghum	nucleus	35.67	29.81
OQU88702	Sorghum	cytosol	18.45	27.44
KXG31098	Sorghum	cytosol, plastid	23.63	26.77
EES18173	Sorghum	nucleus	26.83	22.95
KXG32552	Sorghum	nucleus	25.46	21.19
EER97113	Sorghum	cytosol	23.32	21.13
EES06355	Sorghum	cytosol	17.68	18.92
OQU85656	Sorghum	cytosol	21.95	18.8
EES08807	Sorghum	nucleus	19.51	17.8
KXG26898	Sorghum	cytosol	20.58	17.02
KXG39486	Sorghum	nucleus	20.73	16.39
EER97130	Sorghum	nucleus	22.41	16.1
OQU80872	Sorghum	nucleus	19.51	16.08
EES19545	Sorghum	nucleus	21.34	15.52
KXG34164	Sorghum	plastid	20.12	14.22

Protein Annotations

EnsemblPlants:KXG36086	EnsemblPlantsGene:SORBI_3002G279400	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF23	PFAM:PF04782	PFAM:PF04783	ProteinID:KXG36086	ProteinID:KXG36086.1	SEG:seg
UniParc:UPI00081AC3C6	UniProt:A0A1B6QDT9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:66122955..66127334

Molecular Weight (calculated)

72160.6 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.472

Length

656 amino acids

Sequence
(BLAST)

001: MGCCQSRLER LEAVSRCKAR RRYTKHLVQA RRDMAAAHAL YLRALRATGA SLLHFASAES DHPHPHSSAA HHHHGPPPSP PPPATPPPPP PPPPPPPPLS
101: PSPTTRSWTT NSSSISASTI LPPPPPPPMP SSWDFWDPFA PSSSRSATED ADWDDAATTV VDAPIAAAAP PVVTAAAAVA APPSIVTATT TSTTPSELTV
201: VAVPRGGAGK KDLAEIATEL DEYFLKAADA GARVAALLEA PVCEPPEPTT NSSLPGKVLS YSKSLKPMAW TWGGGGGGYG KGNNGFTRFG RGDGNGGGGG
301: MLSHSSTVEK LYAWEKKLFL EVKSYEGYKQ EHDKKVSLLR KQEVKGVDYL KMEKNKMEIE SLESKMLVAN QSIETTTSEI IRLRESELFP QLLELVAGLM
401: SMWRGMYECH QVQTHIVQQL EYLNNSRNTN PTSNVHRQAA LQLEIEVDRW YSAFCSLVKS QRDYVYSLTG WLRLSLFCHH DPLTKAQNSD IYSLCEEWQL
501: AIDRIPDKVA SEGIKTLLTV IHAVVIQQAE EQKQKKRSES AFKEFEKKAE ELRSLESKYG SYIGAEGYRE MSRKSPVADK RAKVEALRSR ADEEKSKYEK
601: SIGVTRAMTL NNLQTGFPNV FQAMTGFASV CMEAFESVYN FKRSSDRILD VKRLLT

Best Arabidopsis Sequence Match ( AT3G51290.3 )
(BLAST)

001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP

Arabidopsis Description

Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.