Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g083610.2.1 | Tomato | nucleus | 98.23 | 60.91 |
| KRH28816 | Soybean | cytosol | 4.56 | 54.55 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 59.24 | 46.15 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 70.38 | 44.34 |
| KRH76635 | Soybean | cytosol | 69.87 | 44.16 |
| Bra036821.1-P | Field mustard | nucleus | 63.54 | 39.22 |
| CDX73734 | Canola | nucleus | 63.54 | 39.22 |
| CDX77992 | Canola | nucleus | 61.77 | 38.79 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 50.89 | 38.14 |
| Os09t0538700-01 | Rice | nucleus | 60.25 | 36.45 |
| KXG36086 | Sorghum | nucleus | 58.73 | 35.37 |
| TraesCS5D01G336000.1 | Wheat | nucleus | 59.49 | 35.34 |
| KRH08031 | Soybean | cytosol | 38.73 | 35.01 |
| TraesCS5B01G330400.1 | Wheat | nucleus | 58.73 | 34.63 |
| Zm00001d022626_P001 | Maize | nucleus | 56.71 | 34.46 |
| HORVU5Hr1G084030.15 | Barley | nucleus | 58.48 | 34.07 |
| KRH28815 | Soybean | cytosol | 36.46 | 31.86 |
| AT3G51290.2 | Thale cress | cytosol | 63.8 | 31.58 |
| PGSC0003DMT400045246 | Potato | mitochondrion | 15.19 | 22.99 |
| PGSC0003DMT400066867 | Potato | nucleus | 41.27 | 19.13 |
| PGSC0003DMT400037619 | Potato | plastid | 26.33 | 16.1 |
| PGSC0003DMT400046483 | Potato | cytosol | 25.32 | 13.59 |
| PGSC0003DMT400053154 | Potato | nucleus | 22.28 | 12.26 |
| PGSC0003DMT400015690 | Potato | nucleus | 23.04 | 11.91 |
| PGSC0003DMT400043330 | Potato | mitochondrion | 23.54 | 11.52 |
| PGSC0003DMT400005111 | Potato | nucleus | 21.01 | 10.79 |
| PGSC0003DMT400048013 | Potato | nucleus | 23.04 | 9.97 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009224 | EnsemblPlantsGene:PGSC0003DMG400003581 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF23 |
| PFAM:PF04782 | PGSC:PGSC0003DMG400003581 | SEG:seg | UniParc:UPI000296B92E | UniProt:M0ZVT6 | MapMan:35.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400003581]
Coordinates
chr2:-:39167982..39171496
Molecular Weight (calculated)
45009.8 Da
IEP (calculated)
9.138
GRAVY (calculated)
-0.571
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPFSWSFGG SSRWNGIGRF CDDPMNKSIN GANGAKAASH CSTVERLYAW EKKLYLEVKH AEALKLEHEK KGGHARKLEM KRADYVKTEK AKKEVEKLES
101: QMMVAAQAIE TTSAEIIKLR ESELYPQLVD LVKGLMYMWR SMYECHHVQT HIVQQLKYLN TVPSTYPTSE LHRQSTLQLE LELEQWHLSF CNLVKSHRDY
201: IQSLTGWLRL SLFQLGNNPV PKTSQDNAVY SLCEEWHLAV NNAPDKVASE GINSLLTVIH AIVVQQSEEI KQKKKSEMAF KELDKKSSEL RSLESKYGPY
301: SLPDSSSSST RSKNPVTEKR AKVDAIRAKA EDEKAKYDKA VSVTRAMTLN NLQMGLPHVF QAVTGFANVW THAFESVYNQ AKNTDQVHEM KRILP
101: QMMVAAQAIE TTSAEIIKLR ESELYPQLVD LVKGLMYMWR SMYECHHVQT HIVQQLKYLN TVPSTYPTSE LHRQSTLQLE LELEQWHLSF CNLVKSHRDY
201: IQSLTGWLRL SLFQLGNNPV PKTSQDNAVY SLCEEWHLAV NNAPDKVASE GINSLLTVIH AIVVQQSEEI KQKKKSEMAF KELDKKSSEL RSLESKYGPY
301: SLPDSSSSST RSKNPVTEKR AKVDAIRAKA EDEKAKYDKA VSVTRAMTLN NLQMGLPHVF QAVTGFANVW THAFESVYNQ AKNTDQVHEM KRILP
001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
Arabidopsis Description
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.