Factsheet for PGSC0003DMT400015690

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047830.2.1	Tomato	nucleus	96.6	96.72
VIT_11s0103g00310.t01	Wine grape	nucleus	68.46	68.19
KRH12287	Soybean	nucleus	64.66	63.91
KRH19063	Soybean	nucleus	61.78	63.02
KRH02818	Soybean	nucleus	60.99	62.55
KRH37304	Soybean	nucleus	62.43	62.35
CDY66508	Canola	cytosol, nucleus	34.03	61.47
CDY28162	Canola	cytosol	31.41	59.41
AT4G30130.3	Thale cress	nucleus	52.88	55.72
Bra011166.1-P	Field mustard	nucleus	48.17	55.51
CDY28161	Canola	nucleus	14.79	55.12
CDX68628	Canola	nucleus	48.04	54.29
GSMUA_Achr7P16020_001	Banana	nucleus	43.85	53.6
AT2G19090.1	Thale cress	nucleus	55.76	52.33
CDX82615	Canola	nucleus	51.44	52.12
CDY39136	Canola	nucleus	51.31	52.06
Bra038563.1-P	Field mustard	nucleus	54.97	51.79
Bra038839.1-P	Field mustard	nucleus	53.27	51.78
GSMUA_Achr3P00490_001	Banana	nucleus	39.27	48.23
Zm00001d046842_P001	Maize	nucleus	25.52	48.03
Zm00001d046839_P001	Maize	nucleus	25.39	47.78
Zm00001d012496_P001	Maize	nucleus	23.3	47.47
GSMUA_Achr7P04930_001	Banana	nucleus	36.52	47.05
Zm00001d049762_P007	Maize	nucleus	43.85	42.03
Zm00001d013369_P001	Maize	nucleus	33.38	42.01
OQU80872	Sorghum	nucleus	43.72	41.96
Zm00001d031530_P006	Maize	nucleus	43.06	41.75
TraesCS7B01G137800.1	Wheat	nucleus	43.19	38.06
TraesCS7D01G251500.1	Wheat	cytosol	42.93	36.24
HORVU0Hr1G015650.2	Barley	cytosol, nucleus	20.81	35.97
TraesCS7A01G252800.1	Wheat	nucleus	39.66	35.4
EES06355	Sorghum	cytosol	28.27	35.24
TraesCS6B01G182400.1	Wheat	cytosol	28.27	34.5
HORVU7Hr1G052210.21	Barley	cytosol	37.96	34.48
TraesCS6A01G154500.2	Wheat	cytosol	28.4	34.39
TraesCS6D01G144300.1	Wheat	cytosol	28.4	34.28
Zm00001d053766_P001	Maize	cytosol	27.75	33.92
Os02t0175301-00	Rice	nucleus	16.23	33.07
Os02t0175200-00	Rice	cytosol, mitochondrion	12.43	30.16
PGSC0003DMT400053154	Potato	nucleus	25.26	26.88
PGSC0003DMT400046483	Potato	cytosol	25.13	26.09
PGSC0003DMT400043330	Potato	mitochondrion	25.52	24.16
PGSC0003DMT400005111	Potato	nucleus	23.3	23.15
PGSC0003DMT400009224	Potato	nucleus	11.91	23.04
PGSC0003DMT400048013	Potato	nucleus	26.96	22.56
PGSC0003DMT400045246	Potato	mitochondrion	7.59	22.22
PGSC0003DMT400037619	Potato	plastid	15.18	17.96
PGSC0003DMT400066867	Potato	nucleus	18.32	16.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400015690	EnsemblPlantsGene:PGSC0003DMG400006129	EntrezGene:102593432	InterPro:DUF630	InterPro:DUF632	PANTHER:PTHR21450
PANTHER:PTHR21450:SF3	PFAM:PF04782	PFAM:PF04783	PGSC:PGSC0003DMG400006129	RefSeq:XP_006363013.1	RefSeq:XP_015158753.1
SEG:seg	UniParc:UPI0002959093	UniProt:M1A6E5	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006129]

Coordinates

chr7:+:44378728..44386413

Molecular Weight (calculated)

85896.5 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.635

Length

764 amino acids

Sequence
(BLAST)

001: MGCSSSKLDD EEAVQLCKDR KKFIKQAVEQ RMRFASGHLA YIHAMERVSA ALRDYVEVDE PREFLLDSFK TPPFTPVKKV SPGFISIEPK SFSVTHLKPE
101: RKPKSTIKIN YLRSGGNPAV SVEERPRSPE TVRIHAYSPV HQYGMDSFFS MQSSPMNPSI FQYSPNNRPN LPPPSPQTSQ WDFFWNPFSS LDYYGYPMRN
201: NNLEQTILDD DNDGLRQVRE QEGIPELEEE TEVEETDHGE DVKEDRTKGV HSCDKDEVMV EDVDDDDDDD DDSDEEETDD EHENVPHIQE LLSKPNQTTT
301: VAKTQNVGQL SNKETAVADP EAKEETPGFT VYVNRRPTSM SEVIKDLESQ FMIACNSAKE VSTVLEAIRA QYSLQSNDQS AMKMLNPVAL FRSGSSRSSS
401: SRFLINPSTL RDEGGYQSSS DLSDESSVLS SSHQSTLDRL YAWEKKLYEE VRAGERIRLA YEKKLAQLRN LDVNGADPSS VDKTRAAIRN LDTQIKVSIH
501: SVESISRRIE TLRDEELQPQ LLELVQGLGR MWKVMTECHQ MQKHTLDEAK LLLAGTPSKK SGIRKYTVMS PSEPHRLARS AANLEMELRN WRACFESWIV
601: SQRSYLHALA GWLLRCARSD SDTSKFPFSP RRSTGAPPIF SICIQWSRLL DSIQETPVLE GLDFFAAGVG SLYAQQLKED SRRTPGGSKS LGGESDGNMD
701: IVEVGQLDED IMTAEKMAEV AIRVLCAGMS VALSSLTEFA IASADGYTDL VKNCENIKQP QNAV

Best Arabidopsis Sequence Match ( AT4G30130.3 )
(BLAST)

001: MGCSHSKFDD DEAVQICKDR KRFIKQAVEH RTGFASGHIA YIQSLRKVSD ALREYIEGDE PHEFMLDTCV TPVKRMSSSG GFIEISPPSK MVQSEAESKL
101: NVNSYLMASG SRPVRVEEKP PRSPETFQVE TYGADSFFGM NMNMNSPGLG SHNIPPPSPQ NSQWDFFWNP FSALDQYGYS YDNQNGMDDD MRRLRRVREE
201: EGIPDLEEDE YVKFEDHHNM KATEDFNGGK MYQEDKVEHV NEEFTDSGCK IENESDKNCN GTQERRSLEV SRGGTTGHVV GVTSDDGKGE TPGFTVYLNR
301: RPTSMAEVIK DLEDQFAIIC TAGKEVSGLL EASRVQYTSS NELSAMTMLN PVALFRSGGS SRSSSSSRFL ISSSGGSRAS EFESSSEFSE ESCMLSGSHQ
401: STLDRLYAWE KKLYDEVKSG DRIRIAYEKK CLVLRNQDVK GADSSAVDKT RATIRDLHTQ IKVSIHSIES ISERIETLRD QELLPQLLEL VQGLAQMWKV
501: MAECHQIQKR TLDEAKLLLA TTPSNRHKKQ QQTSLPEINS QRLARSALHL VVQLRNWRAC FQAWITSQRS YILSLTGWLL RCFRCDPDPE KVTLTSCPHP
601: IYEVCIQWSR LLNGLNEKPV LDKLDFFASG MGAIYARQLK EDTSPVTDSS RKYSRPESME LVEAEKVEEE KIMTAEKLAE IAVKVLCHGM SVAVSSLAEF
701: SISSADEHSK LVTHREEDMP EQTKI

Arabidopsis Description

DUF630 family protein (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q9SZW6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.