Factsheet for PGSC0003DMT400066867

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090270.2.1	Tomato	nucleus	96.95	94.29
KRH01066	Soybean	nucleus	59.04	69.0
CDX83412	Canola	nucleus	54.46	68.94
CDX95620	Canola	nucleus	54.69	67.05
CDX71821	Canola	nucleus	55.05	66.06
KRH40173	Soybean	nucleus	59.51	66.02
CDY41178	Canola	nucleus	55.16	65.19
CDY42691	Canola	nucleus	55.28	65.15
CDY56992	Canola	nucleus	55.52	65.06
Bra007523.1-P	Field mustard	nucleus	55.05	64.87
VIT_15s0021g01550.t01	Wine grape	nucleus	64.2	64.73
AT1G02110.1	Thale cress	nucleus	53.17	64.44
Bra000365.1-P	Field mustard	nucleus	60.09	63.84
AT3G60320.1	Thale cress	nucleus	59.27	63.44
Bra014497.1-P	Field mustard	nucleus	56.46	63.12
KRH66512	Soybean	nucleus	56.69	60.45
GSMUA_Achr11P...	Banana	nucleus	48.83	57.54
GSMUA_Achr4P21640_001	Banana	nucleus	46.6	56.71
GSMUA_Achr8P10940_001	Banana	nucleus	47.42	54.89
Os10t0562700-01	Rice	nucleus	48.83	54.24
TraesCS1D01G219800.1	Wheat	nucleus	48.24	53.31
TraesCS1B01G231600.1	Wheat	nucleus	48.0	53.19
TraesCS1A01G218200.1	Wheat	nucleus	47.89	53.06
Zm00001d029946_P003	Maize	nucleus	48.12	52.63
EER94480	Sorghum	nucleus	48.24	52.36
Zm00001d000039_P001	Maize	nucleus	47.54	51.86
PGSC0003DMT400009224	Potato	nucleus	19.13	41.27
Zm00001d017461_P001	Maize	cytosol, plastid	25.35	39.34
HORVU6Hr1G062350.2	Barley	plastid	25.82	38.53
TraesCS6D01G225400.1	Wheat	cytosol, mitochondrion	25.0	37.9
TraesCS6A01G243100.1	Wheat	mitochondrion	25.12	37.81
Zm00001d051338_P002	Maize	nucleus	24.3	37.77
TraesCS6B01G281100.1	Wheat	mitochondrion, plastid	25.23	37.72
Os02t0654600-00	Rice	nucleus	26.41	37.69
KXG31098	Sorghum	cytosol, plastid	25.59	37.65
PGSC0003DMT400046483	Potato	cytosol	20.54	23.78
PGSC0003DMT400045246	Potato	mitochondrion	7.16	23.37
PGSC0003DMT400037619	Potato	plastid	16.08	21.21
PGSC0003DMT400053154	Potato	nucleus	17.72	21.03
PGSC0003DMT400043330	Potato	mitochondrion	18.19	19.21
PGSC0003DMT400015690	Potato	nucleus	16.43	18.32
PGSC0003DMT400005111	Potato	nucleus	15.85	17.56
PGSC0003DMT400048013	Potato	nucleus	17.25	16.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400066867	EnsemblPlantsGene:PGSC0003DMG400025994	EntrezGene:102598946	InterPro:DUF630	InterPro:DUF632	ncoils:Coil
PANTHER:PTHR21450	PANTHER:PTHR21450:SF9	PFAM:PF04782	PFAM:PF04783	PGSC:PGSC0003DMG400025994	RefSeq:XP_006347962.1
SEG:seg	UniParc:UPI000295D9B4	UniProt:M1CGB6	MapMan:35.1	:	:

Description

BZIP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400025994]

Coordinates

chr1:-:69344715..69350106

Molecular Weight (calculated)

95355.7 Da

IEP (calculated)

6.839

GRAVY (calculated)

-0.746

Length

852 amino acids

Sequence
(BLAST)

001: MGCAASKLDN EDTVRRCKDR RRLMKEAVYA RHHLAAAHSD YCRSLRVTGS ALSTFAAGEP LSVSDHTPAV LLRTSFSTTA ATTIKTPPPP PPIRIPSPSP
101: SLHPPPPPPP FFPSPSPTIA SSKLPHILSA SSVSSHQRQP PVQQKKPLKL PHILSGSSLN SYNEDYTYDA KANSTYSSTP SQASSVWNWE NFYPPSPPSS
201: EYFERVHNKN NFSREADLED DEDDKASNYT SHSQYSQHHH QHQHQHHPSD QSLHGKSNKQ FDFFDTDSVN DEKLANGSVR NQKKVGENKQ NYAAHHLNNW
301: ESEAEREEVQ CSEWGDHDHY STTTSSDDDD DEEEEVEEKD EIRSGYGPSR SNFGSTASVK NEEGSNINVN SKNFSVKKSD KMSEDGGSSS MSWGNGNGKV
401: EMVSDRSMVV RHKDLAEIVA AIKEYFDKTA SAGEQVSEML ETGRAQLDRS FKQLKKTVYH SSGVFSTISS TWSSKPPLAV KYRFEPSSID EGGQKSLCST
501: LERLLAWEKK LYQEVKAREG VKIEHEKKLA TLQSQESRSD DVAKLDKTKA SITRLQSLMV VTSQAVSTTS SAIIGLRDSD LVPQLVELCH GFMYMWKSMN
601: QFHQVQNDIV QQVRGLINRE INGQSTSDLH RQATRDLESA VSAWHSSYCR LIKFQRDFIQ SLHGWFKLTL VSVNTEPTNG NREFSDSFMF CDEWKLALDR
701: IPDTVASEAI KSFINVVHSI YAKQTEELKI KKRTESASKE LEKKASSVRS IERKYYNSYS MVGIGLPDVG PDNGNVLDAR DPLAEKKAEL AASQRRVEDE
801: MVKHSKAVEV TRAMTLNNIQ TGLPGVFQAM TSFSSLMTEA LEAVCTRSYS IK

Best Arabidopsis Sequence Match ( AT3G60320.1 )
(BLAST)

001: MGCAASKLDN EDAVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSSFASGEP LSVSDQTPAV FLHTPPPPLS EQSPAKFVPP RFSPSPAPSS
101: VYPPSTSPSV ASSKQPSVMS TSSNRRRKQQ PKPRLPHILS ESSPSSSPRS ERSNFMPNLY PSAYQNSTYS ATPSHASSVW NWENFYPPSP PDSEFFNRKA
201: QEKKHNSDNR FNDEDTETVR SEYDFFDTRK QKQKQFESMR NQVEEETETE REEVQCSEWE DHDHYSTTSS SDAAEEEEED DDRESISEVG TRSEFGSTVR
301: SNSMRRHHQQ PSPMPQVYGG AEQSKYDKAD DATISSGSYR GGGDIADMKM VVRHRDLKEI IDAIKENFDK AAASGEQVSQ MLELGRAELD RSFSQLKKTV
401: IHSSSLLSNL SSTWTSKPPL AVKYRIDTTA LDQPNSSKSL CSTLDRLLAW EKKLYEEIKA REGFKIEHEK KLSQLQSQEY KGEDEAKLDK TKASITRLQS
501: LIIVTSQAVT TTSTAIIRLR DTDLVPQLVE LCHGFMYMWK SMHQYHETQN SIVEQVRGLI NRSGKGESTS ELHRQATRDL ESAVSSWHSS FSSLIKFQRD
601: FIHSVHAWFK LTLLPVCQED AANHHKEPLD AYAFCDEWKL ALDRIPDTVA SEAIKSFINV VHVISAKQAD EHKIKKRTES ASKELEKKAS SVRNLERKYY
701: QSYSMVGVGL PESGPDNQHM LDARDPLSDK KSELAVCQRR VEEEMVKYSK AIEVTRAMTL NNLQTGLPGV FQSLTSFSAL FMESLQTVCT RSYSIK

Arabidopsis Description

NRG2Nitrate regulatory gene2 protein [Source:UniProtKB/Swiss-Prot;Acc:Q93YU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.