CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029946_P003	Maize	nucleus	96.31	97.05
Zm00001d000039_P001	Maize	nucleus	94.01	94.49
Os10t0562700-01	Rice	nucleus	85.35	87.35
TraesCS1B01G231600.1	Wheat	nucleus	83.06	84.79
TraesCS1D01G219800.1	Wheat	nucleus	83.18	84.7
TraesCS1A01G218200.1	Wheat	nucleus	82.93	84.66
GSMUA_Achr11P...	Banana	nucleus	61.4	66.67
GSMUA_Achr8P10940_001	Banana	nucleus	60.13	64.13
GSMUA_Achr4P21640_001	Banana	nucleus	56.43	63.29
CDY41178	Canola	nucleus	51.97	56.59
CDX71821	Canola	nucleus	50.96	56.34
Bra007523.1-P	Field mustard	nucleus	51.85	56.29
CDX83412	Canola	nucleus	47.39	55.27
KRH01066	Soybean	nucleus	50.83	54.73
CDY42691	Canola	nucleus	50.32	54.63
CDY56992	Canola	nucleus	50.45	54.47
CDX95620	Canola	nucleus	46.5	52.52
AT1G02110.1	Thale cress	nucleus	46.88	52.35
KRH40173	Soybean	nucleus	51.08	52.21
Bra014497.1-P	Field mustard	nucleus	50.45	51.97
AT3G60320.1	Thale cress	nucleus	51.72	51.01
Bra000365.1-P	Field mustard	nucleus	50.83	49.75
VIT_15s0021g01550.t01	Wine grape	nucleus	53.5	49.7
KRH66512	Soybean	nucleus	49.17	48.31
PGSC0003DMT400066867	Potato	nucleus	52.36	48.24
Solyc01g090270.2.1	Tomato	nucleus	51.47	46.12
KXG31098	Sorghum	cytosol, plastid	29.55	40.07
KXG36086	Sorghum	nucleus	29.81	35.67
EES00973	Sorghum	nucleus	25.99	29.06
OQU88702	Sorghum	cytosol	16.05	28.57
EES18173	Sorghum	nucleus	23.69	24.25
KXG32552	Sorghum	nucleus	23.82	23.73
EER97113	Sorghum	cytosol	20.89	22.65
EES08807	Sorghum	nucleus	17.83	19.47
OQU85656	Sorghum	cytosol	18.47	18.93
KXG39486	Sorghum	nucleus	19.24	18.19
OQU80872	Sorghum	nucleus	18.22	17.96
EES06355	Sorghum	cytosol	14.01	17.94
EES19545	Sorghum	nucleus	19.62	17.07
KXG26898	Sorghum	cytosol	16.69	16.52
KXG34164	Sorghum	plastid	18.98	16.06
EER97130	Sorghum	nucleus	17.32	14.9

Protein Annotations

EnsemblPlants:EER94480	EnsemblPlantsGene:SORBI_3001G296100	EntrezGene:8055638	InterPro:DUF630	InterPro:DUF632	ncoils:Coil
PANTHER:PTHR21450	PANTHER:PTHR21450:SF9	PFAM:PF04782	PFAM:PF04783	ProteinID:EER94480	ProteinID:EER94480.1
RefSeq:XP_002467482.1	SEG:seg	UniParc:UPI0001A82F2E	UniProt:C5WRI4	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:57496306..57500534

Molecular Weight (calculated)

87140.3 Da

IEP (calculated)

6.909

GRAVY (calculated)

-0.589

Length

785 amino acids

Sequence
(BLAST)

001: MGCTASKVEQ EDTVRRCKER RRHMKDAVAA RQLLASAHAD YLRSLRVTAA ALSRFAQGHP SLAVSHHTAP VLLSAAAPPP APSAAHALPT PAPSTATSSS
101: LPPPTPLAQH PHPHPPSQPQ PQPAAAMAVP QPAPARAPRP RRLRVPHILS DSSVASPAQS SFRKQPPVGT PSSSSAWDWE NFYPPSPPDS EFFDRRKAEV
201: EQASRLRELD EEEKARAYLH HHTHYNLKEE DEAAEDDDGE VDHEPEGMHC GGWEDDEHYA STTTSETRSE DEGEMGDRSE CGFAARSECG FVARSEYGGT
301: APSEYAAVPL PLRRDERSEA GDSSSTVTAV TEMRMVVRHR TLAEIVAAIE EYFVKAADSG NDVSELLEAS RAQLDRNFRQ LKKTVYHSNS VLSALSSTWS
401: SKPPLAVRYK LDTNALEMES TEGKSHGSTL ERLLAWEKKL YEEVKARESV KIEHEKKLST LQSLEYRGRD SAKLDKTKAS INKLQSLIVV TSQAATTTSS
501: AIVRVRDNEL APQLVQLCFA LLGMWRSMNH FHEIQNEIVQ QVRGLVDNSM AESTSDLHRL ATRDLEAAVA AWHSNFNRLI KYQRDYIRSL YGWLKLTLCQ
601: VDNSVPQEAH ASMISRELTS FCDEWKQALD RLPDAVASEA IKSFVNVVHV IYTKQAEEMK IKKRTETLSK ELEKKTNSLR SIEKKYYQSY SMVGLGLPGS
701: GRDGIESHAY DARDPLAEKK TEIAQCRRKV EDEMTRHAKA VEVTRSMTLN NIQTGLPGIF QAIAGFSGTV VEALDVVCRR AGSVR

Best Arabidopsis Sequence Match ( AT3G60320.1 )
(BLAST)

001: MGCAASKLDN EDAVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSSFASGEP LSVSDQTPAV FLHTPPPPLS EQSPAKFVPP RFSPSPAPSS
101: VYPPSTSPSV ASSKQPSVMS TSSNRRRKQQ PKPRLPHILS ESSPSSSPRS ERSNFMPNLY PSAYQNSTYS ATPSHASSVW NWENFYPPSP PDSEFFNRKA
201: QEKKHNSDNR FNDEDTETVR SEYDFFDTRK QKQKQFESMR NQVEEETETE REEVQCSEWE DHDHYSTTSS SDAAEEEEED DDRESISEVG TRSEFGSTVR
301: SNSMRRHHQQ PSPMPQVYGG AEQSKYDKAD DATISSGSYR GGGDIADMKM VVRHRDLKEI IDAIKENFDK AAASGEQVSQ MLELGRAELD RSFSQLKKTV
401: IHSSSLLSNL SSTWTSKPPL AVKYRIDTTA LDQPNSSKSL CSTLDRLLAW EKKLYEEIKA REGFKIEHEK KLSQLQSQEY KGEDEAKLDK TKASITRLQS
501: LIIVTSQAVT TTSTAIIRLR DTDLVPQLVE LCHGFMYMWK SMHQYHETQN SIVEQVRGLI NRSGKGESTS ELHRQATRDL ESAVSSWHSS FSSLIKFQRD
601: FIHSVHAWFK LTLLPVCQED AANHHKEPLD AYAFCDEWKL ALDRIPDTVA SEAIKSFINV VHVISAKQAD EHKIKKRTES ASKELEKKAS SVRNLERKYY
701: QSYSMVGVGL PESGPDNQHM LDARDPLSDK KSELAVCQRR VEEEMVKYSK AIEVTRAMTL NNLQTGLPGV FQSLTSFSAL FMESLQTVCT RSYSIK

Arabidopsis Description

NRG2Nitrate regulatory gene2 protein [Source:UniProtKB/Swiss-Prot;Acc:Q93YU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.