CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83412	Canola	nucleus	91.94	94.95
Bra000365.1-P	Field mustard	nucleus	97.41	84.41
CDY56992	Canola	nucleus	76.83	73.45
CDY42691	Canola	nucleus	75.97	73.03
CDY41178	Canola	nucleus	73.53	70.87
CDX71821	Canola	nucleus	71.65	70.14
KRH01066	Soybean	nucleus	66.47	63.37
KRH40173	Soybean	nucleus	68.2	61.72
VIT_15s0021g01550.t01	Wine grape	nucleus	68.63	56.45
KRH66512	Soybean	nucleus	64.75	56.32
PGSC0003DMT400066867	Potato	nucleus	67.05	54.69
GSMUA_Achr11P...	Banana	nucleus	55.25	53.11
Solyc01g090270.2.1	Tomato	nucleus	66.19	52.51
GSMUA_Achr8P10940_001	Banana	nucleus	53.53	50.54
GSMUA_Achr4P21640_001	Banana	nucleus	49.78	49.43
Os10t0562700-01	Rice	nucleus	53.53	48.5
TraesCS1B01G231600.1	Wheat	nucleus	52.37	47.33
TraesCS1D01G219800.1	Wheat	nucleus	52.37	47.21
TraesCS1A01G218200.1	Wheat	nucleus	52.23	47.2
Zm00001d029946_P003	Maize	nucleus	52.66	46.98
EER94480	Sorghum	nucleus	52.52	46.5
Zm00001d000039_P001	Maize	nucleus	52.09	46.35
Zm00001d017461_P001	Maize	cytosol, plastid	29.35	37.16
Zm00001d051338_P002	Maize	nucleus	28.06	35.58
KXG31098	Sorghum	cytosol, plastid	29.64	35.58
HORVU6Hr1G062350.2	Barley	plastid	29.21	35.55
TraesCS6B01G281100.1	Wheat	mitochondrion, plastid	29.06	35.44
TraesCS6D01G225400.1	Wheat	cytosol, mitochondrion	28.63	35.41
TraesCS6A01G243100.1	Wheat	mitochondrion	28.78	35.34
Os02t0654600-00	Rice	nucleus	30.22	35.18
CDX77992	Canola	nucleus	31.08	34.34
CDX73734	Canola	nucleus	31.08	33.75
CDX87081	Canola	nucleus	22.16	28.84
CDX79570	Canola	cytosol	26.04	26.27
CDX84637	Canola	cytosol	25.32	26.23
CDY28162	Canola	cytosol	13.38	23.02
CDX88193	Canola	nucleus	23.45	22.12
CDX80528	Canola	nucleus	23.02	21.83
CDY66508	Canola	cytosol, nucleus	12.66	20.8
CDX69386	Canola	nucleus	17.84	20.53
CDY31475	Canola	nucleus	17.7	20.43
CDY42005	Canola	nucleus	17.7	20.1
CDX68628	Canola	nucleus	19.14	19.67
CDX69122	Canola	nucleus	20.86	19.31
CDY61085	Canola	nucleus	20.72	19.3
CDY17530	Canola	cytosol	19.71	19.3
CDY52975	Canola	nucleus	20.72	19.28
CDX76322	Canola	cytosol	19.28	18.95
CDX75484	Canola	cytosol, plastid	18.7	18.65
CDY04477	Canola	nucleus	19.14	18.5
CDY42454	Canola	cytosol	18.56	18.4
CDX71474	Canola	nucleus	18.99	18.36
CDY18335	Canola	cytosol	18.42	18.1
CDY07877	Canola	cytosol	18.13	17.62
CDY28161	Canola	nucleus	5.18	17.56
CDX88008	Canola	nucleus	17.55	17.06
CDX82615	Canola	nucleus	17.99	16.58
CDY39136	Canola	nucleus	17.7	16.33
CDX88372	Canola	nucleus	19.14	16.1
CDY41788	Canola	nucleus	19.57	15.96
CDY04672	Canola	nucleus	18.99	15.14
CDY08177	Canola	nucleus	18.99	14.81
CDY29526	Canola	peroxisome	18.7	11.31
CDX87516	Canola	nucleus	6.47	10.0

Protein Annotations

EnsemblPlants:CDX95620	EnsemblPlantsGene:GSBRNA2T00101493001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF9	PFAM:PF04782	PFAM:PF04783	ProteinID:CDX95620	ProteinID:CDX95620.1	SEG:seg
UniParc:UPI0004EDF448	MapMan:35.1	:	:	:	:

Description

BnaC03g25010D

Coordinates

chrLK031890:-:270109..273482

Molecular Weight (calculated)

79189.5 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.784

Length

695 amino acids

Sequence
(BLAST)

001: MGCAASKLDN EDTVRRCKDR RRLMTESVRA RHQLAAAHAD YCRSLRLTGS ALSSFAAGEP LAVSDQTPAV FLHTPSEHSS NSKLPPIVTA PPSNRRRKQQ
101: QQQQPKLPHI LSSPSSSERS NFMPSSFYPR AYQNSTYSAT PSQASSVWNW ENFYPPSPPD SEFFNRKSQE RQQHNRFSDQ ERQHDLHNRF SDTETERSEH
201: DFFDSRKEKE EEVQCSEWED HDHYSTTSSS DAAHEEEEDD RDSISEEYSG GQDKYGKGDD AATSYSGRGD VSDMKMVVRH RDLKEIVDAI KENFDKAAEA
301: GEQVSQMLNI GKAQLDRSFS HLKKTVIHSS SVLSNLSSTW TSKPPLEVKY RLDTTALEQP GGPKSLCSSL DRLLAWEKKL YEEVKAREGF KIEHEKKLSK
401: LQSQEYKGDN ETKLDKTKGS ITRLQSLIIV TSQAVSTTST AIVRLRDTDL VPQLVELCHG FMYMWKAMHQ FHEIQNNIVQ QVQGLINRSG KGESTSELHR
501: QATRDLETAV SLWHSSFCRL IKFQREFIRS VQAWFKLTLL PVCHDENPGH KEPVDAYAFC DEWKLTLDRV PDTVASEAIK SFINVVHVIS AKQSEELKIK
601: KRTESASKEL EKKASSLRNI ERKYYQSYST LELGACQRRV EEEMLKHSKA IEVTRAMTLN NLQTGLPGVF QALTSFSAMF TESLQTVCTR SYSIK

Best Arabidopsis Sequence Match ( AT3G60320.1 )
(BLAST)

001: MGCAASKLDN EDAVRRCKDR RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSSFASGEP LSVSDQTPAV FLHTPPPPLS EQSPAKFVPP RFSPSPAPSS
101: VYPPSTSPSV ASSKQPSVMS TSSNRRRKQQ PKPRLPHILS ESSPSSSPRS ERSNFMPNLY PSAYQNSTYS ATPSHASSVW NWENFYPPSP PDSEFFNRKA
201: QEKKHNSDNR FNDEDTETVR SEYDFFDTRK QKQKQFESMR NQVEEETETE REEVQCSEWE DHDHYSTTSS SDAAEEEEED DDRESISEVG TRSEFGSTVR
301: SNSMRRHHQQ PSPMPQVYGG AEQSKYDKAD DATISSGSYR GGGDIADMKM VVRHRDLKEI IDAIKENFDK AAASGEQVSQ MLELGRAELD RSFSQLKKTV
401: IHSSSLLSNL SSTWTSKPPL AVKYRIDTTA LDQPNSSKSL CSTLDRLLAW EKKLYEEIKA REGFKIEHEK KLSQLQSQEY KGEDEAKLDK TKASITRLQS
501: LIIVTSQAVT TTSTAIIRLR DTDLVPQLVE LCHGFMYMWK SMHQYHETQN SIVEQVRGLI NRSGKGESTS ELHRQATRDL ESAVSSWHSS FSSLIKFQRD
601: FIHSVHAWFK LTLLPVCQED AANHHKEPLD AYAFCDEWKL ALDRIPDTVA SEAIKSFINV VHVISAKQAD EHKIKKRTES ASKELEKKAS SVRNLERKYY
701: QSYSMVGVGL PESGPDNQHM LDARDPLSDK KSELAVCQRR VEEEMVKYSK AIEVTRAMTL NNLQTGLPGV FQSLTSFSAL FMESLQTVCT RSYSIK

Arabidopsis Description

NRG2Nitrate regulatory gene2 protein [Source:UniProtKB/Swiss-Prot;Acc:Q93YU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.