CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018963.1-P	Field mustard	nucleus	99.2	98.8
CDY61085	Canola	nucleus	95.85	95.98
AT1G52320.5	Thale cress	nucleus	82.73	77.44
Solyc03g120140.2.1	Tomato	cytosol	22.36	58.19
VIT_09s0002g04590.t01	Wine grape	nucleus	46.85	57.19
CDX87081	Canola	nucleus	39.36	55.06
KRH09858	Soybean	nucleus	50.6	50.81
KRH23466	Soybean	nucleus	50.2	50.07
OQU88702	Sorghum	cytosol	28.92	48.98
CDX80528	Canola	nucleus	46.05	46.93
CDX88193	Canola	nucleus	45.11	45.73
TraesCS2B01G181100.1	Wheat	nucleus	38.82	40.11
TraesCS2D01G161700.1	Wheat	nucleus	38.96	40.03
TraesCS2A01G155900.1	Wheat	nucleus	38.69	39.64
Os07t0211900-01	Rice	plasma membrane	38.02	38.53
Zm00001d019173_P001	Maize	nucleus	36.01	36.25
CDX77992	Canola	nucleus	20.88	24.8
CDX73734	Canola	nucleus	21.15	24.69
CDY28162	Canola	cytosol	13.12	24.26
CDX83412	Canola	nucleus	20.75	23.03
CDY66508	Canola	cytosol, nucleus	12.05	21.28
CDX71821	Canola	nucleus	20.08	21.13
CDY42691	Canola	nucleus	20.21	20.89
CDX84637	Canola	cytosol	18.74	20.86
CDX95620	Canola	nucleus	19.28	20.72
CDY56992	Canola	nucleus	20.08	20.63
CDX79570	Canola	cytosol	18.88	20.46
CDY41178	Canola	nucleus	19.68	20.39
CDX69386	Canola	nucleus	16.47	20.36
CDY42005	Canola	nucleus	16.47	20.1
CDY17530	Canola	cytosol	17.54	18.45
CDX68628	Canola	nucleus	16.6	18.34
CDY31475	Canola	nucleus	14.73	18.27
CDX76322	Canola	cytosol	17.14	18.1
CDX71474	Canola	nucleus	17.27	17.94
CDY04477	Canola	nucleus	17.14	17.8
CDX88008	Canola	nucleus	16.73	17.48
CDX75484	Canola	cytosol, plastid	15.93	17.07
CDY07877	Canola	cytosol	16.33	17.06
CDX69122	Canola	nucleus	16.87	16.78
CDY39136	Canola	nucleus	16.47	16.33
CDX82615	Canola	nucleus	16.47	16.31
CDY04672	Canola	nucleus	18.61	15.94
CDY08177	Canola	nucleus	18.88	15.82
CDX88372	Canola	nucleus	17.14	15.5
CDY41788	Canola	nucleus	16.87	14.79
CDY28161	Canola	nucleus	3.75	13.66
CDY18335	Canola	cytosol	12.45	13.15
CDY42454	Canola	cytosol	11.91	12.7
CDX87516	Canola	nucleus	6.56	10.89
CDY29526	Canola	peroxisome	15.66	10.18

Protein Annotations

EnsemblPlants:CDY52975	EnsemblPlantsGene:GSBRNA2T00008253001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF22	PFAM:PF04782	PFAM:PF04783	ProteinID:CDY52975	ProteinID:CDY52975.1	SEG:seg
UniParc:UPI0004EEF862	UniProt:A0A078IPL4	MapMan:35.1	:	:	:

Description

BnaA06g01600DBnaA06g01600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPL4]

Coordinates

chrLK033147:-:51774..54981

Molecular Weight (calculated)

84789.8 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.879

Length

747 amino acids

Sequence
(BLAST)

001: MGCAQSKIEN EEAVTRCKER KQFMKDAVVA PSSSLPAAVS PPPPSSAAVI SNSAASSSSA AEISQPMPDT LPPPPPPPPL PLQRAATMPE MNGRSGGPPG
101: SGLSGTIIEE DDDGDDDSEV ENHDRLVRKS KSRGGSSRGR PMIDDHHHHQ EAPPPPLPQS MAANQRPIPP PRQHQQQEHL VYDYFFASEN IPGTTLEDTP
201: PPPQAKPAPP QPASPSTDED DELEDEEEEE EDEPVVERKP PVVVEERPKR VEEPSVELEK VANFRGMKKP IGGERRGGGR FPATATNLGN VFNELDDNFL
301: KASESAHEVS KMLEATRLHY HSNFADNRGH IDHSARVMRV ITWNRSFRGL PNADVGKDDF DSEENETHAT VLDKLLAWEK KLYDEVKSGE LMKIEYQRKV
401: AHLNRVKKRG GHSDSLERAK AAVSQLHTRY IVDMQSMDST VSEINRLRDE QLYVKLLHLV EAMGKMWEMM QMHHQRQAEI SKVLRSLDIS QAVKETNDHH
501: HERTIQLLAV VQEWHTQFCR MIDNQKMYIK SLGGWLKLNL IPIESTLKEK VSSPPRVPNP AIQKLLHVWY DRLDKIPDEM ARTAIINFAA VVSTIMQQQE
601: EEMKLRDRCE ETRKELGRKI RQFEDWYHKY MQKRGPEDMN ADGSEGDNEH KDEVVVRQFN VEQIKKRLEE EEEAYQRQSQ QVREKSIASL RTRLPELFQA
701: MSEVAYSCSG MYRAVVAYVT QRQSQSERHQ KPPSQGQTSV RTDVRAE

Best Arabidopsis Sequence Match ( AT1G52320.5 )
(BLAST)

001: MGCAQSKIEN EEAVTRCKER KQLMKDAVTA RNAFAAAHSA YAMALKNTGA ALSDYSHGEF LVSNHSSSSA AAAIASTSSL PTAISPPLPS STAPVSNSTA
101: SSSSAAVPQP IPDTLPPPPP PPPLPLQRAA TMPEMNGRSG GGHAGSGLNG IEEDGALDND DDDDDDDDDS EMENRDRLIR KSRSRGGSTR GNRTTIEDHH
201: LQEEKAPPPP PLANSRPIPP PRQHQHQHQQ QQQQPFYDYF FPNVENMPGT TLEDTPPQPQ PQPTRPVPPQ PHSPVVTEDD EDEEEEEEEE EEEEETVIER
301: KPLVEERPKR VEEVTIELEK VTNLRGMKKS KGIGIPGERR GMRMPVTATH LANVFIELDD NFLKASESAH DVSKMLEATR LHYHSNFADN RGHIDHSARV
401: MRVITWNRSF RGIPNADDGK DDVDLEENET HATVLDKLLA WEKKLYDEVK AGELMKIEYQ KKVAHLNRVK KRGGHSDSLE RAKAAVSHLH TRYIVDMQSM
501: DSTVSEINRL RDEQLYLKLV HLVEAMGKMW EMMQIHHQRQ AEISKVLRSL DVSQAVKETN DHHHERTIQL LAVVQEWHTQ FCRMIDHQKE YIKALGGWLK
601: LNLIPIESTL KEKVSSPPRV PNPAIQKLLH AWYDRLDKIP DEMAKSAIIN FAAVVSTIMQ QQEDEISLRN KCEETRKELG RKIRQFEDWY HKYIQKRGPE
701: GMNPDEADND HNDEVAVRQF NVEQIKKRLE EEEEAYHRQS HQVREKSLAS LRTRLPELFQ AMSEVAYSCS DMYRAITYAS KRQSQSERHQ KPSQGQSS

Arabidopsis Description

BZIP protein, putative; 48652-45869 [Source:UniProtKB/TrEMBL;Acc:Q9C824]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.