CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52975	Canola	nucleus	95.98	95.85
AT1G52320.5	Thale cress	nucleus	81.37	76.07
Solyc03g120140.2.1	Tomato	cytosol	22.52	58.54
VIT_09s0002g04590.t01	Wine grape	nucleus	46.65	56.86
CDX87081	Canola	nucleus	39.41	55.06
KRH09858	Soybean	nucleus	50.54	50.67
KRH23466	Soybean	nucleus	49.87	49.67
OQU88702	Sorghum	cytosol	28.82	48.75
CDX80528	Canola	nucleus	45.98	46.79
CDX88193	Canola	nucleus	45.04	45.59
TraesCS2B01G181100.1	Wheat	nucleus	39.01	40.25
TraesCS2D01G161700.1	Wheat	nucleus	39.14	40.17
TraesCS2A01G155900.1	Wheat	nucleus	38.74	39.64
Os07t0211900-01	Rice	plasma membrane	38.07	38.53
Zm00001d019173_P001	Maize	nucleus	35.92	36.12
CDX77992	Canola	nucleus	20.91	24.8
CDX73734	Canola	nucleus	21.18	24.69
CDY28162	Canola	cytosol	13.14	24.26
CDX83412	Canola	nucleus	20.78	23.03
CDY66508	Canola	cytosol, nucleus	12.33	21.75
CDX71821	Canola	nucleus	20.24	21.27
CDX84637	Canola	cytosol	18.9	21.01
CDY42691	Canola	nucleus	20.11	20.75
CDX95620	Canola	nucleus	19.3	20.72
CDY56992	Canola	nucleus	20.11	20.63
CDX79570	Canola	cytosol	19.03	20.61
CDY41178	Canola	nucleus	19.84	20.53
CDX69386	Canola	nucleus	16.35	20.2
CDY42005	Canola	nucleus	16.35	19.93
CDX68628	Canola	nucleus	16.76	18.49
CDY17530	Canola	cytosol	17.56	18.45
CDY31475	Canola	nucleus	14.88	18.44
CDX76322	Canola	cytosol	17.16	18.1
CDX71474	Canola	nucleus	17.02	17.66
CDY04477	Canola	nucleus	16.89	17.52
CDX88008	Canola	nucleus	16.62	17.34
CDX75484	Canola	cytosol, plastid	15.95	17.07
CDY07877	Canola	cytosol	16.35	17.06
CDY39136	Canola	nucleus	16.76	16.6
CDX82615	Canola	nucleus	16.76	16.58
CDX69122	Canola	nucleus	16.49	16.38
CDY04672	Canola	nucleus	18.63	15.94
CDY08177	Canola	nucleus	18.9	15.82
CDX88372	Canola	nucleus	17.16	15.5
CDY41788	Canola	nucleus	16.89	14.79
CDY28161	Canola	nucleus	3.89	14.15
CDY18335	Canola	cytosol	12.73	13.44
CDY42454	Canola	cytosol	12.2	12.98
CDX87516	Canola	nucleus	6.43	10.67
CDY29526	Canola	peroxisome	15.95	10.36

Protein Annotations

EnsemblPlants:CDY61085	EnsemblPlantsGene:GSBRNA2T00030524001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF22	PFAM:PF04782	PFAM:PF04783	ProteinID:CDY61085	ProteinID:CDY61085.1	SEG:seg
UniParc:UPI0004EDAEA3	UniProt:A0A078JAS7	MapMan:35.1	:	:	:

Description

BnaC06g41130DBnaC06g41130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAS7]

Coordinates

chrLK033954:+:24053..27254

Molecular Weight (calculated)

84592.7 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.876

Length

746 amino acids

Sequence
(BLAST)

001: MGCAQSKIEN EEAVTRCKER KQFMKDAVVA PSSLPTAVSP PPPSSAAAIS NSVASSSSAG GEIPQPMPDT LPPPPPPPPP PLQRAATMPE MNGRSGGPSG
101: SGLSGTIIEE DDDGDDDSEV ENHDRLVRKS KSRGGSSRGR PMIDDDRHHH HNQEAPPPPL PQSMAANPRP IPPPRQHQQQ EHLVYDYFFA SENIPGTTLE
201: DIPPPQAKPA PPQPASPSSE EDDELEEEED EPVVERKPPV VEERPKRVEE PSVELEKVAN FRGMKKPIGG ERRGGGRFPA TATATNLANV FNELDDNFLK
301: ASESAHEVSK MLEATRLHYH SNFADNRGHI DHSARVMRVI TWNRSFRGLP NTDVGKDDFD SEENETHATV LDKLLAWEKK LYDEVKSGEL MKIEYQRKVA
401: HLNRVKKRGG HSDSLERAKA AVSQLHTRYI VDMQSMDSTV SEINRLRDEQ LYVKLLHLVE AMGKMWEMMQ MHHQRQAEIS KLLKSLDISQ AVKETNDHHH
501: ERTIQLLAVV QEWHTQFCRM IDNQKMYIKS LGGWLKLNLI PIESTLKEKV SSPPRVPNPA IQKLLHIWYD RLDKIPDEMA RTAIINFAAV VSTIMQQQEE
601: EMKLRDRCGE TRKELGRKIR QFEDWYHKYM QKRGPEDMNA DGSEADNEHK DEVVVRQFNV EQIKKRLEEE EEAYQRQSQQ VREKSIASLR TRLPELFQAM
701: SEVAYSCSGM YRAVVAYVTQ RQSQNERHQK SSSQGQTSVR TDVRAE

Best Arabidopsis Sequence Match ( AT1G52320.5 )
(BLAST)

001: MGCAQSKIEN EEAVTRCKER KQLMKDAVTA RNAFAAAHSA YAMALKNTGA ALSDYSHGEF LVSNHSSSSA AAAIASTSSL PTAISPPLPS STAPVSNSTA
101: SSSSAAVPQP IPDTLPPPPP PPPLPLQRAA TMPEMNGRSG GGHAGSGLNG IEEDGALDND DDDDDDDDDS EMENRDRLIR KSRSRGGSTR GNRTTIEDHH
201: LQEEKAPPPP PLANSRPIPP PRQHQHQHQQ QQQQPFYDYF FPNVENMPGT TLEDTPPQPQ PQPTRPVPPQ PHSPVVTEDD EDEEEEEEEE EEEEETVIER
301: KPLVEERPKR VEEVTIELEK VTNLRGMKKS KGIGIPGERR GMRMPVTATH LANVFIELDD NFLKASESAH DVSKMLEATR LHYHSNFADN RGHIDHSARV
401: MRVITWNRSF RGIPNADDGK DDVDLEENET HATVLDKLLA WEKKLYDEVK AGELMKIEYQ KKVAHLNRVK KRGGHSDSLE RAKAAVSHLH TRYIVDMQSM
501: DSTVSEINRL RDEQLYLKLV HLVEAMGKMW EMMQIHHQRQ AEISKVLRSL DVSQAVKETN DHHHERTIQL LAVVQEWHTQ FCRMIDHQKE YIKALGGWLK
601: LNLIPIESTL KEKVSSPPRV PNPAIQKLLH AWYDRLDKIP DEMAKSAIIN FAAVVSTIMQ QQEDEISLRN KCEETRKELG RKIRQFEDWY HKYIQKRGPE
701: GMNPDEADND HNDEVAVRQF NVEQIKKRLE EEEEAYHRQS HQVREKSLAS LRTRLPELFQ AMSEVAYSCS DMYRAITYAS KRQSQSERHQ KPSQGQSS

Arabidopsis Description

BZIP protein, putative; 48652-45869 [Source:UniProtKB/TrEMBL;Acc:Q9C824]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.