Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87516 | Canola | nucleus | 51.69 | 94.89 |
| Bra015667.1-P | Field mustard | nucleus | 94.92 | 93.89 |
| CDY41788 | Canola | nucleus | 90.92 | 88.15 |
| AT1G77500.1 | Thale cress | nucleus | 73.0 | 68.6 |
| CDY04672 | Canola | nucleus | 62.71 | 59.4 |
| CDY08177 | Canola | nucleus | 63.56 | 58.92 |
| PGSC0003DMT400045246 | Potato | mitochondrion | 15.38 | 48.66 |
| KRH64648 | Soybean | cytosol | 47.22 | 46.59 |
| KRH53256 | Soybean | cytosol | 47.09 | 46.2 |
| VIT_18s0001g02480.t01 | Wine grape | nucleus | 43.46 | 46.03 |
| GSMUA_Achr3P22040_001 | Banana | cytosol | 34.38 | 41.4 |
| Solyc06g060270.2.1 | Tomato | nucleus | 45.76 | 37.28 |
| GSMUA_Achr9P08510_001 | Banana | nucleus | 34.14 | 36.06 |
| CDY17530 | Canola | cytosol | 29.78 | 34.65 |
| CDX88008 | Canola | nucleus | 29.9 | 34.55 |
| CDY07877 | Canola | cytosol | 29.78 | 34.41 |
| CDX76322 | Canola | cytosol | 29.42 | 34.37 |
| GSMUA_Achr3P19020_001 | Banana | cytosol | 33.41 | 33.45 |
| CDX75484 | Canola | cytosol, plastid | 27.6 | 32.71 |
| CDX69122 | Canola | nucleus | 29.42 | 32.36 |
| TraesCS1A01G264800.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 34.62 | 32.06 |
| TraesCS1D01G265000.1 | Wheat | nucleus | 34.75 | 31.96 |
| TraesCS1B01G275500.1 | Wheat | nucleus | 34.38 | 31.87 |
| Os05t0425000-00 | Rice | nucleus | 33.41 | 31.19 |
| EES19545 | Sorghum | nucleus | 33.78 | 30.93 |
| Zm00001d038223_P001 | Maize | cytosol | 33.9 | 30.87 |
| Os01t0960200-00 | Rice | nucleus | 9.93 | 30.6 |
| CDY18335 | Canola | cytosol | 25.3 | 29.56 |
| CDY42454 | Canola | cytosol | 24.58 | 28.96 |
| CDY28161 | Canola | nucleus | 7.14 | 28.78 |
| CDY31475 | Canola | nucleus | 20.58 | 28.24 |
| TraesCS3A01G503100.1 | Wheat | cytosol | 25.18 | 28.11 |
| HORVU3Hr1G110830.5 | Barley | cytosol, nucleus | 23.61 | 28.06 |
| TraesCS3D01G509700.1 | Wheat | plastid | 30.39 | 27.28 |
| Zm00001d011823_P002 | Maize | plastid | 29.3 | 26.95 |
| KXG34164 | Sorghum | plastid | 30.02 | 26.72 |
| TraesCS3B01G566500.1 | Wheat | plastid | 30.02 | 26.41 |
| CDY28162 | Canola | cytosol | 12.71 | 25.99 |
| CDY66508 | Canola | cytosol, nucleus | 12.83 | 25.06 |
| CDX69386 | Canola | nucleus | 17.92 | 24.5 |
| CDX68628 | Canola | nucleus | 19.85 | 24.26 |
| CDY42005 | Canola | nucleus | 17.92 | 24.18 |
| CDY39136 | Canola | nucleus | 20.7 | 22.71 |
| CDX82615 | Canola | nucleus | 20.7 | 22.68 |
| CDY04477 | Canola | nucleus | 19.49 | 22.39 |
| CDX77992 | Canola | nucleus | 16.95 | 22.26 |
| CDX71474 | Canola | nucleus | 19.37 | 22.25 |
| CDX87081 | Canola | nucleus | 14.29 | 22.1 |
| CDX73734 | Canola | nucleus | 17.07 | 22.03 |
| CDX84637 | Canola | cytosol | 17.8 | 21.91 |
| CDX79570 | Canola | cytosol | 17.92 | 21.48 |
| CDX83412 | Canola | nucleus | 17.31 | 21.25 |
| CDX71821 | Canola | nucleus | 16.95 | 19.72 |
| CDY41178 | Canola | nucleus | 16.95 | 19.42 |
| CDX80528 | Canola | nucleus | 17.07 | 19.24 |
| CDY42691 | Canola | nucleus | 16.83 | 19.23 |
| CDX95620 | Canola | nucleus | 16.1 | 19.14 |
| CDX88193 | Canola | nucleus | 17.07 | 19.13 |
| CDY56992 | Canola | nucleus | 16.71 | 18.98 |
| CDY61085 | Canola | nucleus | 15.5 | 17.16 |
| CDY52975 | Canola | nucleus | 15.5 | 17.14 |
| CDY29526 | Canola | peroxisome | 20.34 | 14.62 |
Protein Annotations
| EnsemblPlants:CDX88372 | EnsemblPlantsGene:GSBRNA2T00147895001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF8 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX88372 | ProteinID:CDX88372.1 | SEG:seg |
| UniParc:UPI0004EDE02E | MapMan:35.1 | : | : | : | : |
Description
BnaC06g38160D
Coordinates
chrLK031855:+:607803..611464
Molecular Weight (calculated)
92124.6 Da
IEP (calculated)
7.070
GRAVY (calculated)
-0.623
Length
826 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCGGSKIDD QQLVILCRER KELIKTASHH RTALAVAHLV YLQSLRDVGE AIQRFVDEES VVSSSASSSA VLTLPSDEGK PKKRKGSISS TSISHSVIEE
101: EDGDGSHLNL STGSESGLED DDHIQIDTTP EPDLNRAKQT IIPPGYPTGY PPPGSPTGYA PPGYPYPYPV GGWGFNPNPN RGMYFMKKSS TPSQPFVFKP
201: ENHRVEPSDP GYFINPGITG SAKPPPALPS PPRASTWDFL NVFDTYDYGN ARSRAAPSYL ASISSSPDSK EVREREGIPE LEEVSDHEVI KQVYRQRPKR
301: TPLKKVKETV PLPEEVATDS ETVSTFSGSD VESDFHYVKS SNSSSGQETI METESYGNKK GVSLELEEEA STSSSSFDVE SSSKISSFSS LSIRGTREIK
401: GVVEEIKSEF EIASSCGKEV AMLLEVTKLP YQHKDKGGFK VILSRIMYLV APSKRSKPEL SIRLTSRTVQ MAKAYNEQDV NVGFTGNLSS TLEKLYAWEK
501: KLYKEVKGEE KLRSIYEEKC KSLKKMDSHG AEATKIEATR AYIRKLLMKI DISIRSVDSI SRRIHKLRDE ELQPQLTQLI HGLIRMWRSM LKCHQKQFQA
601: IMETKVQSVK ANTVSSSKAF LDLEMELRDW CSSFNEWVNT QKTYVHSLNR WLSKCLHYEP EATEDGYAPF SPSQIGAPPV FTICKDWQEA MGRVSGEKVS
701: NAMQGFASSL HELWEKQEEE EQRVRALEME VRDHAESDKR SVVSKGRSES GVSVLDDLRV DLDSMRKKLA EERGKRRENT VKVASSSSSS TLKGGLAPIF
801: DALRKFNVEV VKAHGIVRLQ HSQTSS
101: EDGDGSHLNL STGSESGLED DDHIQIDTTP EPDLNRAKQT IIPPGYPTGY PPPGSPTGYA PPGYPYPYPV GGWGFNPNPN RGMYFMKKSS TPSQPFVFKP
201: ENHRVEPSDP GYFINPGITG SAKPPPALPS PPRASTWDFL NVFDTYDYGN ARSRAAPSYL ASISSSPDSK EVREREGIPE LEEVSDHEVI KQVYRQRPKR
301: TPLKKVKETV PLPEEVATDS ETVSTFSGSD VESDFHYVKS SNSSSGQETI METESYGNKK GVSLELEEEA STSSSSFDVE SSSKISSFSS LSIRGTREIK
401: GVVEEIKSEF EIASSCGKEV AMLLEVTKLP YQHKDKGGFK VILSRIMYLV APSKRSKPEL SIRLTSRTVQ MAKAYNEQDV NVGFTGNLSS TLEKLYAWEK
501: KLYKEVKGEE KLRSIYEEKC KSLKKMDSHG AEATKIEATR AYIRKLLMKI DISIRSVDSI SRRIHKLRDE ELQPQLTQLI HGLIRMWRSM LKCHQKQFQA
601: IMETKVQSVK ANTVSSSKAF LDLEMELRDW CSSFNEWVNT QKTYVHSLNR WLSKCLHYEP EATEDGYAPF SPSQIGAPPV FTICKDWQEA MGRVSGEKVS
701: NAMQGFASSL HELWEKQEEE EQRVRALEME VRDHAESDKR SVVSKGRSES GVSVLDDLRV DLDSMRKKLA EERGKRRENT VKVASSSSSS TLKGGLAPIF
801: DALRKFNVEV VKAHGIVRLQ HSQTSS
001: MGCGGSKVDN QPIVILCRER KELLKAASYH RSALAVAHLT YFQSLSDVGE AIQRFVDDEV VAGFSSSSSP DSPVLTLPSD EGKPTKHKRI SPSSTTSISH
101: SVIEEEDTDD DSHLHLSSGS ESESEVGSKD HIQITSTPEQ ERSTESFPSG YHPTNYAPPV YPPGYPPGYP FSYPTGYSSG NYQPGYPNYT GENPYGNRGM
201: YYMKKSAPQS RPFIFQPENH RVEENAQWPS DSGFRNTGVQ RRSPSPLPPP SPPTVSTWDF LNVFDTYDYS NARSRASGYY PMGMASISSS PDSKEVRERE
301: GIPELEEVTE QEVIKQVYRR PKRPGLEKVK EHRDEHKHNV FPERNINKRE VPMPEQVTES SLDSETISSF SGSDVESEFH YVNGGEGKSS SISSISHGAG
401: TKSSREVEEQ YGRKKGVSFE LEETTSTSSF DVESSKISSL SSLSIHATRD LREVVKEIKS EFEIASSCGK EVALLLEVGK LPYQHKNNGV KVILSRIMYL
501: VAPSTRSSHS QPRLSIRLTS RTRKMAKSYN GQDVNGGFNG NLSSTLEKLY AWEKKLYKEV KDEEKLRAIY EEKCRRLKKM DSHGAESIKI DATRAAIRKL
601: LTKIDVCIRS VDSISSRIHK LRDEELQPQL IQLIHGLIRM WRSMLRCHQK QFQAIRESKV RSLKANTTLQ NDSGSTAILD LEIELREWCI SFNNWVNTQK
701: SYVQFLSGWL TKCLHYEPEA TDDGIAPFSP SQIGAPPIFI ICKDWQEAMC RISGENVTNA MQGFASSLHE LWEKQEEEQR VKAQSEQRDA ESERSVVSKG
801: RSESGISALD DLKVDLDSMR KRLVEERGKG KETIKLVNNA SSSSLKAGLV PIFGALRKFT SEVVKAHEIV RLQHPQTSS
101: SVIEEEDTDD DSHLHLSSGS ESESEVGSKD HIQITSTPEQ ERSTESFPSG YHPTNYAPPV YPPGYPPGYP FSYPTGYSSG NYQPGYPNYT GENPYGNRGM
201: YYMKKSAPQS RPFIFQPENH RVEENAQWPS DSGFRNTGVQ RRSPSPLPPP SPPTVSTWDF LNVFDTYDYS NARSRASGYY PMGMASISSS PDSKEVRERE
301: GIPELEEVTE QEVIKQVYRR PKRPGLEKVK EHRDEHKHNV FPERNINKRE VPMPEQVTES SLDSETISSF SGSDVESEFH YVNGGEGKSS SISSISHGAG
401: TKSSREVEEQ YGRKKGVSFE LEETTSTSSF DVESSKISSL SSLSIHATRD LREVVKEIKS EFEIASSCGK EVALLLEVGK LPYQHKNNGV KVILSRIMYL
501: VAPSTRSSHS QPRLSIRLTS RTRKMAKSYN GQDVNGGFNG NLSSTLEKLY AWEKKLYKEV KDEEKLRAIY EEKCRRLKKM DSHGAESIKI DATRAAIRKL
601: LTKIDVCIRS VDSISSRIHK LRDEELQPQL IQLIHGLIRM WRSMLRCHQK QFQAIRESKV RSLKANTTLQ NDSGSTAILD LEIELREWCI SFNNWVNTQK
701: SYVQFLSGWL TKCLHYEPEA TDDGIAPFSP SQIGAPPIFI ICKDWQEAMC RISGENVTNA MQGFASSLHE LWEKQEEEQR VKAQSEQRDA ESERSVVSKG
801: RSESGISALD DLKVDLDSMR KRLVEERGKG KETIKLVNNA SSSSLKAGLV PIFGALRKFT SEVVKAHEIV RLQHPQTSS
Arabidopsis Description
DUF630 family protein, putative (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q9CAQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.