CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77992	Canola	nucleus	97.5	99.21
Bra036821.1-P	Field mustard	nucleus	99.06	99.06
KRH28816	Soybean	cytosol	3.75	72.73
AT3G51290.2	Thale cress	cytosol	90.47	72.56
KRH76635	Soybean	cytosol	65.31	66.88
VIT_04s0023g03760.t01	Wine grape	mitochondrion	63.44	64.75
PGSC0003DMT400009224	Potato	nucleus	39.22	63.54
Solyc02g083610.2.1	Tomato	nucleus	61.56	61.85
KRH28815	Soybean	cytosol	43.59	61.73
GSMUA_Achr3P00690_001	Banana	nucleus	43.59	55.03
GSMUA_Achr1P26500_001	Banana	cytosol	44.38	53.89
KXG36086	Sorghum	nucleus	54.38	53.05
Zm00001d022626_P001	Maize	nucleus	53.28	52.46
TraesCS5D01G336000.1	Wheat	nucleus	54.38	52.33
Os09t0538700-01	Rice	nucleus	53.12	52.07
TraesCS5B01G330400.1	Wheat	nucleus	54.22	51.79
HORVU5Hr1G084030.15	Barley	nucleus	53.91	50.88
KRH08031	Soybean	cytosol	33.44	48.97
CDX83412	Canola	nucleus	34.69	32.99
CDX71821	Canola	nucleus	35.31	31.83
CDY41178	Canola	nucleus	35.47	31.48
CDY56992	Canola	nucleus	35.62	31.36
CDY42691	Canola	nucleus	35.31	31.26
CDX95620	Canola	nucleus	33.75	31.08
CDX79570	Canola	cytosol	32.19	29.9
CDX84637	Canola	cytosol	31.25	29.81
CDX87081	Canola	nucleus	22.66	27.15
CDX80528	Canola	nucleus	26.41	23.06
CDY28162	Canola	cytosol	14.53	23.02
CDX88193	Canola	nucleus	26.41	22.93
CDY42005	Canola	nucleus	21.09	22.06
CDX69386	Canola	nucleus	20.78	22.02
CDY31475	Canola	nucleus	20.62	21.93
CDY66508	Canola	cytosol, nucleus	14.22	21.51
CDY61085	Canola	nucleus	24.69	21.18
CDY52975	Canola	nucleus	24.69	21.15
CDX69122	Canola	nucleus	24.69	21.04
CDY17530	Canola	cytosol	22.97	20.7
CDX76322	Canola	cytosol	22.81	20.65
CDX75484	Canola	cytosol, plastid	22.03	20.23
CDX68628	Canola	nucleus	21.25	20.12
CDY28161	Canola	nucleus	6.25	19.51
CDY07877	Canola	cytosol	21.09	18.88
CDY04477	Canola	nucleus	20.94	18.64
CDX71474	Canola	nucleus	20.78	18.5
CDX88008	Canola	nucleus	20.62	18.46
CDY39136	Canola	nucleus	21.56	18.33
CDX82615	Canola	nucleus	21.41	18.17
CDY41788	Canola	nucleus	22.97	17.25
CDY04672	Canola	nucleus	23.28	17.09
CDX88372	Canola	nucleus	22.03	17.07
CDY08177	Canola	nucleus	23.59	16.95
CDY42454	Canola	cytosol	18.44	16.83
CDY18335	Canola	cytosol	18.59	16.83
CDX87516	Canola	nucleus	8.44	12.0
CDY29526	Canola	peroxisome	21.25	11.84

Protein Annotations

EnsemblPlants:CDX73734	EnsemblPlantsGene:GSBRNA2T00109339001	InterPro:DUF630	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450
PANTHER:PTHR21450:SF23	PFAM:PF04782	PFAM:PF04783	ProteinID:CDX73734	ProteinID:CDX73734.1	SEG:seg
SUPFAM:SSF101447	UniParc:UPI0004EEFB4F	MapMan:35.1	:	:	:

Description

BnaC08g22690D

Coordinates

chrLK031799:-:2399984..2402752

Molecular Weight (calculated)

71676.0 Da

IEP (calculated)

8.856

GRAVY (calculated)

-0.600

Length

640 amino acids

Sequence
(BLAST)

001: MGCCQSRIDR KEIVSRCKAR KRYLKHLVKA RQSLSVSHAL YLRSLRATGS SLVNFSSKET PLHLHHNPPS PSPPPPPPPA RPQQPPLSPS SETTWTSTTT
101: SSALPPPPPP PPPPPPQPSS TWDFWDPFIP PPPSSSEEEW EEETTTGTTT RTATGTASSD AAPTTAPTTA TPQGSSVVSG FSKDTTTTGS ELAVVVPRNS
201: KDLMEIIKEV DEYFLKAADS GAPLSSLLEI STSINATAFS AHAKGGKMYS NYECNLNPTS FWTKGFAPKL NEYRNSALVG GGNCIVGSHS STIDRLYAWE
301: KKLFQEVKNA ESIKMEHEKK VEQVRRLEMK RADYVKTEKA KKDVEKLESQ LTVSSQAIQS ASNEIIKIRE TELYPQLVEL IKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTFQLEL EIQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLA RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: INSFLTAVHG IVAQQAEEHK QKKRSDSMLK DFEKKAASLR GLESKYSPYS VPEGRKKNPV IEKRAKVEFL KGKAEEEKSK HEKAVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKCIGE EQEEVKRLLP

Best Arabidopsis Sequence Match ( AT3G51290.3 )
(BLAST)

001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP

Arabidopsis Description

Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.