Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G336000.1 | Wheat | nucleus | 92.92 | 94.74 |
| TraesCS5B01G330400.1 | Wheat | nucleus | 93.07 | 94.18 |
| Os09t0538700-01 | Rice | nucleus | 81.12 | 84.23 |
| KXG36086 | Sorghum | nucleus | 79.65 | 82.32 |
| Zm00001d022626_P001 | Maize | nucleus | 77.58 | 80.92 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 49.85 | 66.67 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 50.15 | 64.52 |
| PGSC0003DMT400009224 | Potato | nucleus | 34.07 | 58.48 |
| KRH76635 | Soybean | cytosol | 53.83 | 58.4 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 53.1 | 57.42 |
| Solyc02g083610.2.1 | Tomato | nucleus | 53.54 | 56.99 |
| KRH28816 | Soybean | cytosol | 2.65 | 54.55 |
| CDX77992 | Canola | nucleus | 50.15 | 54.05 |
| KRH28815 | Soybean | cytosol | 35.99 | 53.98 |
| CDX73734 | Canola | nucleus | 50.88 | 53.91 |
| Bra036821.1-P | Field mustard | nucleus | 50.59 | 53.59 |
| KRH08031 | Soybean | cytosol | 29.65 | 46.0 |
| AT3G51290.2 | Thale cress | cytosol | 50.88 | 43.23 |
| HORVU3Hr1G050880.1 | Barley | nucleus | 33.92 | 33.05 |
| HORVU6Hr1G062350.2 | Barley | plastid | 23.01 | 27.32 |
| HORVU2Hr1G096140.2 | Barley | cytosol | 12.83 | 23.26 |
| HORVU5Hr1G084580.2 | Barley | cytosol | 22.27 | 20.71 |
| HORVU7Hr1G018230.3 | Barley | nucleus | 21.53 | 19.78 |
| HORVU6Hr1G064670.13 | Barley | nucleus | 21.98 | 19.61 |
| HORVU0Hr1G015650.2 | Barley | cytosol, nucleus | 12.54 | 19.23 |
| HORVU5Hr1G058240.4 | Barley | nucleus | 19.91 | 19.04 |
| HORVU3Hr1G042920.6 | Barley | cytosol, nucleus | 24.19 | 18.68 |
| HORVU3Hr1G110830.5 | Barley | cytosol, nucleus | 18.88 | 18.42 |
| HORVU4Hr1G052040.1 | Barley | cytosol | 22.42 | 18.29 |
| HORVU2Hr1G096180.1 | Barley | cytosol | 16.08 | 17.81 |
| HORVU7Hr1G057760.4 | Barley | cytosol | 16.67 | 17.25 |
| HORVU5Hr1G086500.2 | Barley | nucleus | 20.65 | 14.46 |
| HORVU7Hr1G052210.21 | Barley | cytosol | 17.4 | 14.03 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G084030.15 | EnsemblPlantsGene:HORVU5Hr1G084030 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF23 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | UniParc:UPI000B479493 | UniProt:A0A287S2D8 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:570961949..570966036
Molecular Weight (calculated)
74838.9 Da
IEP (calculated)
8.835
GRAVY (calculated)
-0.562
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCQSRLER QEAVSRCKAR RRYTKHLVQA RRDMAAAHAL YLRSLRATGA ALLQFATAEA DNPHPHPHTH HQRHHHQPPP PPPPPPPPPP PPPPPPPPPP
101: LSPARTASSW TTTTSSTISA SQILPPPPPP PAPMPSSWDF WDPFAPSSSR SPADAAAEWD DAATSLAESP RATPPPVVVT ANAAQAQPPA PSVVTATTST
201: ASELTVVALP RGGGGGAAGK KDLAEIATEI DEYFLKAADA GARVAALLEA PICELPDASN SLPGKNSRQM SLPRRVMSYG KNLKPTGWSW GGGGGGYGKG
301: SSNGFSRFER GDEGVMGNGG GSGILSHSST VERLYAWEKK LFLEVKNYEG LKQEHDKKVG LLRKQEVRGV DYLKMEKNRM EMESLESKML VATQSIDTTT
401: SEIIRLRESE LFPQLLELVA GLMSMWRGMY ECHQVQTHMV QQLEYLTMST NPTSNDHRQA ALQLEIEVDR WYSAFCSLVK SQRDYVYSLT GWLRLSLFQC
501: HHNPLIKDIQ NSDIYSLCEE WQLAIDRIPD KVASEGIKTL LSVIHAVVIQ QAEEQKQKKR SDAAFKEFEK KTEELRSLES KFGPYSADGY GEMTRKSPVA
601: DKRAKVEALR SRADDEKSKH QKSVGLTRAM TLKNLQTGFP NVFQAMRGFS SVCMEAFESV YNFKRSSDRA LDMKRLLN
101: LSPARTASSW TTTTSSTISA SQILPPPPPP PAPMPSSWDF WDPFAPSSSR SPADAAAEWD DAATSLAESP RATPPPVVVT ANAAQAQPPA PSVVTATTST
201: ASELTVVALP RGGGGGAAGK KDLAEIATEI DEYFLKAADA GARVAALLEA PICELPDASN SLPGKNSRQM SLPRRVMSYG KNLKPTGWSW GGGGGGYGKG
301: SSNGFSRFER GDEGVMGNGG GSGILSHSST VERLYAWEKK LFLEVKNYEG LKQEHDKKVG LLRKQEVRGV DYLKMEKNRM EMESLESKML VATQSIDTTT
401: SEIIRLRESE LFPQLLELVA GLMSMWRGMY ECHQVQTHMV QQLEYLTMST NPTSNDHRQA ALQLEIEVDR WYSAFCSLVK SQRDYVYSLT GWLRLSLFQC
501: HHNPLIKDIQ NSDIYSLCEE WQLAIDRIPD KVASEGIKTL LSVIHAVVIQ QAEEQKQKKR SDAAFKEFEK KTEELRSLES KFGPYSADGY GEMTRKSPVA
601: DKRAKVEALR SRADDEKSKH QKSVGLTRAM TLKNLQTGFP NVFQAMRGFS SVCMEAFESV YNFKRSSDRA LDMKRLLN
001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
Arabidopsis Description
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.