Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G336000.1 | Wheat | nucleus | 96.87 | 97.59 |
| HORVU5Hr1G084030.15 | Barley | nucleus | 94.18 | 93.07 |
| Os09t0538700-01 | Rice | nucleus | 82.09 | 84.23 |
| KXG36086 | Sorghum | nucleus | 80.75 | 82.47 |
| Zm00001d022626_P001 | Maize | nucleus | 78.66 | 81.08 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 50.9 | 67.26 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 51.04 | 64.9 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 55.07 | 58.85 |
| PGSC0003DMT400009224 | Potato | nucleus | 34.63 | 58.73 |
| KRH76635 | Soybean | cytosol | 54.33 | 58.24 |
| Solyc02g083610.2.1 | Tomato | nucleus | 53.73 | 56.51 |
| CDX73734 | Canola | nucleus | 51.79 | 54.22 |
| CDX77992 | Canola | nucleus | 50.75 | 54.05 |
| Bra036821.1-P | Field mustard | nucleus | 51.49 | 53.91 |
| KRH28815 | Soybean | cytosol | 35.67 | 52.88 |
| KRH28816 | Soybean | cytosol | 2.54 | 51.52 |
| KRH08031 | Soybean | cytosol | 29.7 | 45.54 |
| AT3G51290.2 | Thale cress | cytosol | 51.79 | 43.48 |
| TraesCS3B01G240800.1 | Wheat | nucleus | 33.88 | 32.48 |
| TraesCS1B01G231600.1 | Wheat | nucleus | 35.22 | 30.69 |
| TraesCS6B01G281100.1 | Wheat | mitochondrion, plastid | 22.24 | 26.14 |
| TraesCS2B01G181100.1 | Wheat | nucleus | 25.37 | 23.51 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 27.01 | 22.85 |
| TraesCS5B01G335000.1 | Wheat | cytosol | 23.88 | 21.65 |
| TraesCS3B01G231600.1 | Wheat | cytosol | 24.93 | 20.39 |
| TraesCS6B01G182400.1 | Wheat | cytosol | 17.61 | 18.85 |
| TraesCS4B01G176800.1 | Wheat | cytosol | 22.69 | 18.7 |
| TraesCS6B01G271800.1 | Wheat | nucleus | 20.9 | 18.37 |
| TraesCS2B01G423500.1 | Wheat | cytosol | 20.9 | 18.28 |
| TraesCS5B01G193300.1 | Wheat | cytosol | 19.25 | 17.89 |
| TraesCS7B01G171500.1 | Wheat | cytosol | 20.6 | 17.29 |
| TraesCS3B01G566500.1 | Wheat | plastid | 22.69 | 16.19 |
| TraesCS1B01G275500.1 | Wheat | nucleus | 21.34 | 16.05 |
| TraesCS7B01G137800.1 | Wheat | nucleus | 20.45 | 15.8 |
| TraesCS5B01G348100.1 | Wheat | nucleus | 20.45 | 14.27 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G330400.1 | EnsemblPlantsGene:TraesCS5B01G330400 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF23 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5B:+:514849022..514853454
Molecular Weight (calculated)
73833.7 Da
IEP (calculated)
8.387
GRAVY (calculated)
-0.545
Length
670 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCQSRLER QEAVSRCKAR RRYTKHLVQA RRDMAAAHAL YLRSLRATGA ALLQFATAEA DNPHPHPRPR PAHHQRHQPP PSPPPPPPPP PPPPPPPPLS
101: PARTASSWTT TTSSTISASQ ILPPPPPPPP PEAPMPSSWD FWDPFAPSSS RSPADAAAEW DDAATSLAES PRAAPPPVVV TAKAAQAQPP APSVITTTTS
201: TASELTVVAL PRGGGGGGGA AGKKDLAEIA TEIDEYFLKA ADAGARVAAL LEAPICELPN ANNSLPGRVM SYGKNLKPTG WSWGAGGGYG KGSSNGFSRF
301: WTGDEGMMGN GGGSGILSHS STVERLYAWE KKLFLEVKNY EGHKQEHDKK VGLLRKQEVR GVDYLKMEKN RMEMESLESK MLVATQSIDT TTSEIIRLRE
401: SELFPQLLEL VAGLTSMWRG MYECHQVQTH MVQQLEYLTM STNPTSNDHR QAALQLEIEV DRWYSAFCSL VKSQRDYVYS LTGWLRLSLF QCHHNPLMKD
501: IQNSDIYSLC EEWQLAIDRI PDKVASEGIK TLLSVIHAVV VQQAEEQKQK KRSDAAFKDF EKKTEELRSL ESKYGPYSAE GYGEMTRKTP VAEKRAKVEA
601: LRSRADDEKS KHEKCVGVTR AMTLNNLQTG FPNVFQAMTG FASVCMEAFE SVYNFKRSSD RALDMKRLLT
101: PARTASSWTT TTSSTISASQ ILPPPPPPPP PEAPMPSSWD FWDPFAPSSS RSPADAAAEW DDAATSLAES PRAAPPPVVV TAKAAQAQPP APSVITTTTS
201: TASELTVVAL PRGGGGGGGA AGKKDLAEIA TEIDEYFLKA ADAGARVAAL LEAPICELPN ANNSLPGRVM SYGKNLKPTG WSWGAGGGYG KGSSNGFSRF
301: WTGDEGMMGN GGGSGILSHS STVERLYAWE KKLFLEVKNY EGHKQEHDKK VGLLRKQEVR GVDYLKMEKN RMEMESLESK MLVATQSIDT TTSEIIRLRE
401: SELFPQLLEL VAGLTSMWRG MYECHQVQTH MVQQLEYLTM STNPTSNDHR QAALQLEIEV DRWYSAFCSL VKSQRDYVYS LTGWLRLSLF QCHHNPLMKD
501: IQNSDIYSLC EEWQLAIDRI PDKVASEGIK TLLSVIHAVV VQQAEEQKQK KRSDAAFKDF EKKTEELRSL ESKYGPYSAE GYGEMTRKTP VAEKRAKVEA
601: LRSRADDEKS KHEKCVGVTR AMTLNNLQTG FPNVFQAMTG FASVCMEAFE SVYNFKRSSD RALDMKRLLT
001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
Arabidopsis Description
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.