Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G330400.1 | Wheat | nucleus | 97.59 | 96.87 |
| HORVU5Hr1G084030.15 | Barley | nucleus | 94.74 | 92.92 |
| Os09t0538700-01 | Rice | nucleus | 82.86 | 84.38 |
| KXG36086 | Sorghum | nucleus | 81.05 | 82.16 |
| Zm00001d022626_P001 | Maize | nucleus | 79.1 | 80.92 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 51.28 | 67.26 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 51.43 | 64.9 |
| PGSC0003DMT400009224 | Potato | nucleus | 35.34 | 59.49 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 55.19 | 58.53 |
| KRH76635 | Soybean | cytosol | 54.59 | 58.08 |
| Solyc02g083610.2.1 | Tomato | nucleus | 54.74 | 57.14 |
| CDX73734 | Canola | nucleus | 52.33 | 54.38 |
| CDX77992 | Canola | nucleus | 51.28 | 54.21 |
| Bra036821.1-P | Field mustard | nucleus | 52.03 | 54.06 |
| KRH28815 | Soybean | cytosol | 36.09 | 53.1 |
| KRH28816 | Soybean | cytosol | 2.56 | 51.52 |
| KRH08031 | Soybean | cytosol | 30.38 | 46.22 |
| AT3G51290.2 | Thale cress | cytosol | 52.48 | 43.73 |
| TraesCS3D01G213000.1 | Wheat | nucleus | 34.14 | 32.48 |
| TraesCS1D01G219800.1 | Wheat | nucleus | 35.64 | 30.74 |
| TraesCS6D01G225400.1 | Wheat | cytosol, mitochondrion | 22.86 | 27.05 |
| TraesCS2D01G161700.1 | Wheat | nucleus | 25.71 | 23.52 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 23.31 | 22.9 |
| TraesCS5D01G340500.1 | Wheat | plastid | 24.06 | 21.65 |
| TraesCS3D01G202100.2 | Wheat | nucleus | 25.41 | 20.86 |
| TraesCS6D01G144300.1 | Wheat | cytosol | 18.5 | 19.43 |
| TraesCS7D01G074000.2 | Wheat | nucleus | 21.2 | 19.18 |
| TraesCS2D01G402400.1 | Wheat | cytosol | 21.35 | 18.71 |
| TraesCS4D01G178500.1 | Wheat | cytosol | 22.56 | 18.45 |
| TraesCS5D01G201000.1 | Wheat | nucleus | 19.25 | 18.0 |
| TraesCS6D01G235200.1 | Wheat | nucleus | 20.3 | 17.69 |
| TraesCS7D01G273600.1 | Wheat | cytosol | 20.15 | 16.54 |
| TraesCS3D01G509700.1 | Wheat | plastid | 22.71 | 16.41 |
| TraesCS1D01G265000.1 | Wheat | nucleus | 21.35 | 15.81 |
| TraesCS7D01G251500.1 | Wheat | cytosol | 20.9 | 15.36 |
| TraesCS5D01G353500.1 | Wheat | nucleus | 20.45 | 14.11 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G336000.1 | EnsemblPlantsGene:TraesCS5D01G336000 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF23 | PFAM:PF04782 | PFAM:PF04783 | SEG:seg | SUPFAM:SSF101447 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:+:425647566..425651688
Molecular Weight (calculated)
73233.1 Da
IEP (calculated)
8.443
GRAVY (calculated)
-0.518
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCQSRLER QEAVSRCKAR RRYTKHLVQA RRDMAASHAL YLRSLRATGA ALLQFATAEA DNPHPHPRPT HHQRHQPPPS PPPPPPPPPP PPPPPLSPAR
101: TASSWTTTTS STISASQILP PPPPPPPPPP APMPSSWDFW DPFAPSSSRS PADAAAEWDD AATSLAESPR AAPPPVVVTA KAAQAQPPAP SVVTTTTSTA
201: SELTVVALPR GGGAAGKKDL AEIATDIDEY FLKAADAGAR VAALLEAPIC ELPNANNSLP GRVMSYGKNL KPTGWSWGGG GGGYGKGSSN GFSRFGTGDE
301: GMMGNGGGSG ILSHSSTVER LYAWEKKLFL EVKNYEGLKQ EHDKKVGLLR KQEVRGVDYL KMEKNRMEME SLESKMLVAT QSIDTTTSEI IRLRESELFP
401: QLLELVAGLM SMWRGMYECH QVQTHMVQQL EYLTMSTSPT SNDHRQAALQ LEIEVDRWYS AFCSLVKSQR DYVYSLTGWL RLSLFQCLHN PLMKDIQNSD
501: IYSLCEEWQL AIDRIPDKVA SEGIKTLLSV IHAVVVQQAE EQKQKKRSDA AFKDFEKKTE ELRSLESKYG PYSAEGYGEM TRKTPVAEKR AKVEALRSRV
601: DDEKTKHEKS VGVTRAMTLN NLQTGFPNVF QAMTGFASVC MEAFESVYNF KRSSDRALDM KRLLT
101: TASSWTTTTS STISASQILP PPPPPPPPPP APMPSSWDFW DPFAPSSSRS PADAAAEWDD AATSLAESPR AAPPPVVVTA KAAQAQPPAP SVVTTTTSTA
201: SELTVVALPR GGGAAGKKDL AEIATDIDEY FLKAADAGAR VAALLEAPIC ELPNANNSLP GRVMSYGKNL KPTGWSWGGG GGGYGKGSSN GFSRFGTGDE
301: GMMGNGGGSG ILSHSSTVER LYAWEKKLFL EVKNYEGLKQ EHDKKVGLLR KQEVRGVDYL KMEKNRMEME SLESKMLVAT QSIDTTTSEI IRLRESELFP
401: QLLELVAGLM SMWRGMYECH QVQTHMVQQL EYLTMSTSPT SNDHRQAALQ LEIEVDRWYS AFCSLVKSQR DYVYSLTGWL RLSLFQCLHN PLMKDIQNSD
501: IYSLCEEWQL AIDRIPDKVA SEGIKTLLSV IHAVVVQQAE EQKQKKRSDA AFKDFEKKTE ELRSLESKYG PYSAEGYGEM TRKTPVAEKR AKVEALRSRV
601: DDEKTKHEKS VGVTRAMTLN NLQTGFPNVF QAMTGFASVC MEAFESVYNF KRSSDRALDM KRLLT
001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP
Arabidopsis Description
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.