Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73734 | Canola | nucleus | 72.56 | 90.47 |
| Bra036821.1-P | Field mustard | nucleus | 72.56 | 90.47 |
| CDX77992 | Canola | nucleus | 71.3 | 90.46 |
| KRH76635 | Soybean | cytosol | 51.88 | 66.24 |
| VIT_04s0023g03760.t01 | Wine grape | mitochondrion | 50.63 | 64.43 |
| PGSC0003DMT400009224 | Potato | nucleus | 31.58 | 63.8 |
| KRH28816 | Soybean | cytosol | 2.63 | 63.64 |
| Solyc02g083610.2.1 | Tomato | nucleus | 49.75 | 62.32 |
| KRH28815 | Soybean | cytosol | 35.09 | 61.95 |
| GSMUA_Achr3P00690_001 | Banana | nucleus | 34.59 | 54.44 |
| GSMUA_Achr1P26500_001 | Banana | cytosol | 35.71 | 54.08 |
| KXG36086 | Sorghum | nucleus | 43.98 | 53.51 |
| Zm00001d022626_P001 | Maize | nucleus | 43.11 | 52.92 |
| Os09t0538700-01 | Rice | nucleus | 42.98 | 52.53 |
| TraesCS5D01G336000.1 | Wheat | nucleus | 43.73 | 52.48 |
| TraesCS5B01G330400.1 | Wheat | nucleus | 43.48 | 51.79 |
| HORVU5Hr1G084030.15 | Barley | nucleus | 43.23 | 50.88 |
| KRH08031 | Soybean | cytosol | 27.32 | 49.89 |
| AT1G02110.1 | Thale cress | nucleus | 28.07 | 31.86 |
| AT3G60320.1 | Thale cress | nucleus | 29.82 | 29.9 |
| AT2G34670.2 | Thale cress | nucleus | 25.94 | 29.83 |
| AT1G20530.1 | Thale cress | cytosol | 17.54 | 22.8 |
| AT5G25590.1 | Thale cress | nucleus | 21.55 | 22.19 |
| AT4G39790.1 | Thale cress | plastid | 17.67 | 21.46 |
| AT1G52320.5 | Thale cress | nucleus | 21.43 | 21.43 |
| AT4G30130.3 | Thale cress | nucleus | 19.05 | 20.97 |
| AT2G17110.1 | Thale cress | nucleus | 18.05 | 19.65 |
| AT4G35240.1 | Thale cress | nucleus | 20.55 | 18.96 |
| AT2G27090.2 | Thale cress | nucleus | 17.17 | 18.44 |
| AT2G19090.1 | Thale cress | nucleus | 18.3 | 17.94 |
| AT1G77500.1 | Thale cress | nucleus | 19.3 | 17.52 |
| AT5G54480.1 | Thale cress | nucleus | 15.66 | 17.36 |
| AT1G21740.1 | Thale cress | cytosol | 20.55 | 17.21 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:824292 | ProteinID:AEE78775.1 | ArrayExpress:AT3G51290 | EnsemblPlantsGene:AT3G51290 |
| RefSeq:AT3G51290 | TAIR:AT3G51290 | RefSeq:AT3G51290-TAIR-G | EnsemblPlants:AT3G51290.2 | TAIR:AT3G51290.2 | Unigene:At.28445 |
| ncoils:Coil | InterPro:DUF630 | InterPro:DUF632 | UniProt:F4J3B2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0032259 |
| InterPro:IPR003578 | RefSeq:NP_001190052.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PFAM:PF04782 | PFAM:PF04783 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51420 |
| PANTHER:PTHR21450 | PANTHER:PTHR21450:SF23 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF101447 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | InterPro:Small_GTPase_Rho | TIGRFAMs:TIGR00231 | UniParc:UPI0001E92DD5 |
| SEG:seg | : | : | : | : | : |
Description
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
Coordinates
chr3:+:19039512..19044371
Molecular Weight (calculated)
89184.0 Da
IEP (calculated)
8.922
GRAVY (calculated)
-0.515
Length
798 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEDYVPTV FDNFSANVVV NGSTVNLGLW DTAGQEDYNR LRPLSYRGAD VFILAFSLIS KASYENVSKK
701: WIPELKHYAP GVPIVLVGTK LDLRDDKQFF IDHPGAVPIT TAQGEELRKQ IGAPTYIECS SKTQENVKAV FDAAIRVVLQ PPKQKKKKSK AQKACSIL
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEDYVPTV FDNFSANVVV NGSTVNLGLW DTAGQEDYNR LRPLSYRGAD VFILAFSLIS KASYENVSKK
701: WIPELKHYAP GVPIVLVGTK LDLRDDKQFF IDHPGAVPIT TAQGEELRKQ IGAPTYIECS SKTQENVKAV FDAAIRVVLQ PPKQKKKKSK AQKACSIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.