Factsheet for VIT_04s0023g03760.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76635	Soybean	cytosol	71.29	71.52
PGSC0003DMT400009224	Potato	nucleus	44.34	70.38
KRH28815	Soybean	cytosol	49.28	68.36
Solyc02g083610.2.1	Tomato	nucleus	67.3	66.25
KRH28816	Soybean	cytosol	3.35	63.64
Bra036821.1-P	Field mustard	nucleus	64.75	63.44
CDX73734	Canola	nucleus	64.75	63.44
CDX77992	Canola	nucleus	63.64	63.43
GSMUA_Achr3P00690_001	Banana	nucleus	50.56	62.52
GSMUA_Achr1P26500_001	Banana	cytosol	51.83	61.67
Os09t0538700-01	Rice	nucleus	58.69	56.36
KXG36086	Sorghum	nucleus	58.85	56.25
Zm00001d022626_P001	Maize	nucleus	57.26	55.23
TraesCS5D01G336000.1	Wheat	nucleus	58.53	55.19
TraesCS5B01G330400.1	Wheat	nucleus	58.85	55.07
HORVU5Hr1G084030.15	Barley	nucleus	57.42	53.1
AT3G51290.2	Thale cress	cytosol	64.43	50.63
KRH08031	Soybean	cytosol	34.13	48.97
VIT_10s0003g04480.t01	Wine grape	nucleus	38.92	37.42
VIT_15s0021g01550.t01	Wine grape	nucleus	39.71	29.47
VIT_09s0002g04590.t01	Wine grape	nucleus	27.11	27.78
VIT_03s0038g02660.t01	Wine grape	nucleus	25.52	24.58
VIT_04s0008g04200.t01	Wine grape	cytosol	27.43	24.33
VIT_07s0031g02650.t01	Wine grape	cytosol	13.24	23.51
VIT_00s0434g00010.t01	Wine grape	nucleus	25.2	22.19
VIT_00s0264g00010.t01	Wine grape	nucleus	25.2	21.79
VIT_06s0009g01610.t01	Wine grape	nucleus	12.28	20.21
VIT_00s1403g00010.t01	Wine grape	nucleus	22.97	19.51
VIT_11s0103g00310.t01	Wine grape	nucleus	23.6	19.3
VIT_18s0001g02480.t01	Wine grape	nucleus	22.17	17.82
VIT_03s0038g03260.t01	Wine grape	cytosol	22.17	17.12
VIT_18s0001g00170.t01	Wine grape	cytosol	20.1	16.98
VIT_06s0009g01600.t01	Wine grape	nucleus	10.85	14.44

Protein Annotations

EntrezGene:100245548	wikigene:100245548	MapMan:35.1	EMBL:AM428562	ProteinID:CAN62559	ProteinID:CAN62559.1
ProteinID:CCB44342	ProteinID:CCB44342.1	ncoils:Coil	InterPro:DUF630	InterPro:DUF632	UniProt:F6GWK7
EMBL:FN594959	EntrezGene:LOC100245548	wikigene:LOC100245548	PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450
PANTHER:PTHR21450:SF23	SUPFAM:SSF101447	UniParc:UPI0002108968	ArrayExpress:VIT_04s0023g03760	EnsemblPlantsGene:VIT_04s0023g03760	EnsemblPlants:VIT_04s0023g03760.t01
unigene:Vvi.22523	RefSeq:XP_002265051	RefSeq:XP_002265051.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:20287572..20291561

Molecular Weight (calculated)

70042.6 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.463

Length

627 amino acids

Sequence
(BLAST)

001: MVSRCKARKR YMKQFVKARQ ALSAAHSMYI RSLRGTGSAL LQFATAETNL HYHHHHHHHH LTPIPPSPPP QQPSPPPPPP PMSPSSDTWT SITASPSHLP
101: PPPPPPPPPP PPPAQSSWDF WDPFVPSSSR SVTEEEWEAT TMASEAPATT AVSASVTAPP SVVSGFSKDT SSELAMVVSR NSKDLAEIVK EVDDYFLKAA
201: DAGSEVSLLL EIPRSTFSNQ TGGKVYSCGK SSNPLWCPWA SNSKLNGFGR LCEEMVVTDI AGGGIISGSS SHCSTVERLY AWEKKLFQEV KNAESIKIEH
301: EKCVAQLRKL EVKRAADYVK TEKTKKEVEK LESRMMVASQ AIETTSTEII KLRESELYPQ LLDIVKGSMS MWRSMYECHQ VQMHIVQQLK YLNAIPSTEP
401: TSEIHRQSTL QLELEVQQWH STFCSLVKTQ RDYIQALTGW LRLSLFQFSK NPLSKTRQES MIYSLCEEWH LALDRVPDKV ASEGIKSLLT VIHAIVVQQA
501: DEQKQKKRSE SAFKDLEKKL VELRALECKQ SPFSTPESSA ITRSKDPIAE KRAKVATLRA KAEEEKSKHE KAVSVTRSVT LNNLQMGFPH VFQAVTGFAS
601: VCTHAFESVH NQAKCMDQEL DVKRILP

Best Arabidopsis Sequence Match ( AT3G51290.3 )
(BLAST)

001: MGCCQSRIDS KEIVSRCKAR KRYLKHLVKA RQTLSVSHAL YLRSLRAVGS SLVHFSSKET PLHLHHNPPS PSPPPPPPPR PPPPPLSPGS ETTTWTTTTT
101: SSVLPPPPPP PPPPPPPSST WDFWDPFIPP PPSSSEEEWE EETTTATRTA TGTGSDAAVT TAPTTATPQA SSVVSGFSKD TMTTTTTGSE LAVVVSRNGK
201: DLMEIIKEVD EYFLKAADSG APLSSLLEIS TSITDFSGHS KSGKMYSSSN YECNLNPTSF WTRGFAPSKL SEYRNAGGVI GGNCIVGSHS STVDRLYAWE
301: KKLYQEVKYA ESIKMDHEKK VEQVRRLEMK RAEYVKTEKA KKDVEKLESQ LSVSSQAIQS ASNEIIKLRE TELYPQLVEL VKGLMCMWRS MYESHQVQTH
401: IVQQLKYLNT IPSTEPTSEL HRQSTLQLEL EVQQWHHSFC NLVKAQRDYI QSLTGWLRLS LFQFSKNPLV RSSYESKIYS FCEEWHLAID RIPDKVASEG
501: IKSFLTAVHG IVAQQADEHK QKKRTESMLK DFEKKSASLR ALESKYSPYS VPESRKKNPV IEKRVKVEML KGKAEEEKSK HEKSVSVTRA MTLNNLQMGF
601: PHVFQAMVGF SSVCMQAFES VYNQAKSIGE DQEEVKRLLP

Arabidopsis Description

Pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Source:UniProtKB/TrEMBL;Acc:F4J3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.