Factsheet for VIT_00s0434g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0264g00010.t01	Wine grape	nucleus	100.0	98.21
VIT_03s0038g02660.t01	Wine grape	nucleus	58.43	63.9
GSMUA_Achr1P07380_001	Banana	cytosol, nucleus, peroxisome	39.75	51.64
GSMUA_Achr8P34030_001	Banana	cytosol	42.42	50.67
Os09t0542500-00	Rice	cytosol	38.06	49.45
EER97113	Sorghum	cytosol	46.77	45.99
Zm00001d022598_P001	Maize	cytosol	44.94	44.26
TraesCS5D01G340500.1	Wheat	plastid	45.79	44.11
TraesCS5A01G335700.1	Wheat	cytosol	46.07	43.91
TraesCS5B01G335000.1	Wheat	cytosol	45.51	43.84
HORVU5Hr1G084580.2	Barley	cytosol	43.96	42.94
VIT_07s0031g02650.t01	Wine grape	cytosol	16.01	32.29
VIT_00s1403g00010.t01	Wine grape	nucleus	27.81	26.83
VIT_06s0009g01610.t01	Wine grape	nucleus	13.76	25.72
VIT_09s0002g04590.t01	Wine grape	nucleus	21.91	25.49
VIT_11s0103g00310.t01	Wine grape	nucleus	27.25	25.29
VIT_04s0023g03760.t01	Wine grape	mitochondrion	22.19	25.2
VIT_10s0003g04480.t01	Wine grape	nucleus	22.33	24.39
VIT_18s0001g02480.t01	Wine grape	nucleus	25.7	23.46
VIT_03s0038g03260.t01	Wine grape	cytosol	26.26	23.03
VIT_18s0001g00170.t01	Wine grape	cytosol	22.75	21.83
VIT_04s0008g04200.t01	Wine grape	cytosol	21.63	21.78
VIT_06s0009g01600.t01	Wine grape	nucleus	12.78	19.32
VIT_15s0021g01550.t01	Wine grape	nucleus	22.47	18.93

Protein Annotations

EntrezGene:100853587	wikigene:100853587	EntrezGene:100855179	wikigene:100855179	MapMan:35.1	ProteinID:CCB51674
ProteinID:CCB51674.1	ncoils:Coil	InterPro:DUF630	InterPro:DUF632	UniProt:F6HHH8	EMBL:FN595758
EntrezGene:LOC100853587	wikigene:LOC100853587	EntrezGene:LOC100855179	wikigene:LOC100855179	PFAM:PF04782	PFAM:PF04783
PANTHER:PTHR21450	PANTHER:PTHR21450:SF17	UniParc:UPI00021087AF	ArrayExpress:VIT_00s0434g00010	EnsemblPlantsGene:VIT_00s0434g00010	EnsemblPlants:VIT_00s0434g00010.t01
RefSeq:XP_003635164	RefSeq:XP_003635164.1	RefSeq:XP_003635341	RefSeq:XP_003635341.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:28889600..28893380

Molecular Weight (calculated)

80695.7 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.639

Length

712 amino acids

Sequence
(BLAST)

001: MGCGASRPDE DDDVVSLCRE RKRLLKSAIE RRYSLADAHS RYNDSLNGVA AAIKLFVARH SSPLSPFLIT FPTASDTDAT QPSNPMFLQQ TPSESTHEAI
101: GCKSSDSVIS SDSSEGESEN EGEEEGEGGV CDHFYEGMAP PVPLPQGDFE WDFFYPFDTV RTEVGLDNGF RRTSDDDDLR RIRQQEGIPE LEEDGAREKG
201: ERKVVVQMNG GGVEGMTAAG EPSPNQEHKG LRVIDTEASG RELLEALKDV EDHFVRAYES GFDVSRLLEV NRVHLLSSLE EIKESPKKLV RSITWNRSNL
301: SRSSSSKTFL APGSKSSSTW SELGNDLIDD YEGMASGSLS QTLERLYAWE KKLYEEVKAG DETRRTYERK CSHLKKQDDS GDGLHSVDKT SAEVNDLYTR
401: ILVGLQSAES ISKRIEKLRD EELLPQLVEL LQGLIRIWKI MLESHETQNK IMSEVKSFTC PSYGKFCNDS HRLATFQLET ELQNWRACFA EYFSAQKAYI
501: EALNGWLSKF IAPEVEFYSR IKSSGPPYEI RGPLLLVICR HWLASLEKLP DKLVKCTMKS FGKDIRAIWV QQGEEQQQKR KVDGLAKELD RRVHAFKRAQ
601: SRILESKVPE QNKEADIRYR IEYLSEREGQ LDDFRKRLDA EKAKHLGSMQ ETQQITLNAF QIGFFSVFES LTEFSKASLK MYDDLVTFCA SYPKVGDERS
701: DKPCYIMADM GN

Best Arabidopsis Sequence Match ( AT4G39790.1 )
(BLAST)

001: MGHSILEKMG CSNSKASMNK KNEPLHLCKE RKRFVKQAMD SRCALAAAHV SYIRSLRNIG ACLRQYAEAE TAHESSPSLT ATEPEKSPSH NSSYPDDSVD
101: SPLSHNSNPN PNPKPLFNLS YMKTETASST VTFTINPLSD GDDDLEVTMP AFSPPPPPRP RRPETSSWDY FDTCDDFDSF RFVGLSEQTE IDSECDAAVI
201: GLEKITSQGN VAKSGSETLQ DSSFKTKQRK QSCEDNDERE DPSEFITHRA KDFVSSMKDI EHKFFRASES GREVSRMLEV NKIRVGFADM TGKGNSIAFL
301: AALKRACCRG KSYSPVSQEP LSHQVTKVIV WKRTSSSRSS TSRNPLIQTS KEDHDDESGS DFIEEFCMIS GSHSSSLDRL YAWERKLYDE VKASEMIRKE
401: YDRKCEQLRN QFAKDHSAKS MDKTRAAAKD LHSRIRVAIQ SVESISKRIE RIRDDELHPQ LLEFLQGLIR MWKAMLECHH TQYITISLAY HCRHSSKTAH
501: ESVLKRRILA ELLEETECFG LSFVDLVHSM ASYVEALNGW LHNCVLLPQE RSTRNRRPWS PRRVLAPPIF VLCRDWSAGI KTLPSDELSG SIKGFSLDME
601: MLGEEKGGSL LVSDLSSVHS SLAKLLERLK KFSEASLKMY EDVKVKSEAA RVAYTNK

Arabidopsis Description

BZIP transcription factor, putative (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q5XV54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.